Variant report

Variant	rs643307
Chromosome Location	chr5:43020020-43020021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:137)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:137 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr5:43017089-43021486	Hela-S3	cervix:	n/a	n/a
2	SMARCB1	chr5:43019536-43020859	Hela-S3	cervix:	n/a	n/a
3	CEBPB	chr5:43019605-43020700	GM12878	blood:	n/a	n/a
4	CREB1	chr5:43019638-43020592	GM12878	blood:	n/a	n/a
5	BRCA1	chr5:43018938-43020884	Hela-S3	cervix:	n/a	n/a
6	MYC	chr5:43018990-43020788	NB4	blood:	n/a	chr5:43019739-43019748
7	MAFK	chr5:43019291-43020405	IMR90	lung:	n/a	n/a
8	TBP	chr5:43018989-43020537	GM12878	blood:	n/a	n/a
9	POLR2A	chr5:43019539-43020356	U87	brain:	n/a	n/a
10	RELA	chr5:43019745-43020776	GM19099	blood:	n/a	n/a
11	MYBL2	chr5:43019493-43020419	HepG2	liver:	n/a	n/a
12	POLR2A	chr5:43019539-43020581	GM12892	blood:	n/a	n/a
13	POLR2A	chr5:43017361-43020879	Hela-S3	cervix:	n/a	n/a
14	MAX	chr5:43019651-43020892	A549	lung:	n/a	chr5:43019739-43019748
15	RFX5	chr5:43019613-43020449	GM12878	blood:	n/a	n/a
16	POLR2A	chr5:43017243-43020794	GM12878	blood:	n/a	n/a
17	POLR2A	chr5:43019514-43020510	GM12891	blood:	n/a	n/a
18	JUND	chr5:43019765-43020378	HepG2	liver:	n/a	n/a
19	HA-E2F1	chr5:43019742-43020931	MCF-7	breast:	n/a	chr5:43020722-43020733 chr5:43020182-43020199 chr5:43020722-43020733 chr5:43020726-43020733 chr5:43020722-43020733 chr5:43020185-43020196
20	GTF2F1	chr5:43019616-43020849	Hela-S3	cervix:	n/a	n/a
21	MAX	chr5:43019000-43020854	Hela-S3	cervix:	n/a	chr5:43019739-43019748
22	EBF1	chr5:43019638-43020526	GM12878	blood:	n/a	n/a
23	ATF2	chr5:43019417-43020914	GM12878	blood:	n/a	n/a
24	MAX	chr5:43019568-43020774	NB4	blood:	n/a	chr5:43019739-43019748
25	MAZ	chr5:43019597-43020827	Hela-S3	cervix:	n/a	chr5:43019739-43019748
26	GTF3C2	chr5:43018977-43020668	Hela-S3	cervix:	n/a	n/a
27	CEBPB	chr5:43019996-43020764	MCF-7	breast:	n/a	n/a
28	CTCF	chr5:43018922-43020920	A549	lung:	n/a	n/a
29	RPC155	chr5:43019702-43020567	Hela-S3	cervix:	n/a	n/a
30	EP300	chr5:43019668-43020699	Hela-S3	cervix:	n/a	n/a
31	SIN3A	chr5:43019742-43020654	H1-hESC	embryonic stem cell:	n/a	n/a
32	CHD1	chr5:43016973-43020911	IMR90	lung:	n/a	n/a
33	MAFK	chr5:43019046-43020716	Hela-S3	cervix:	n/a	n/a
34	POLR2A	chr5:43018987-43020785	PBDE	blood:	n/a	n/a
35	NFATC1	chr5:43019804-43020647	GM12878	blood:	n/a	n/a
36	POLR2A	chr5:43017338-43020832	GM19099	blood:	n/a	n/a
37	MAX	chr5:43019743-43020605	ECC-1	luminal epithelium:	n/a	n/a
38	CTCF	chr5:43019880-43020030	HRE	kidney:	n/a	n/a
39	MXI1	chr5:43019651-43020679	HepG2	liver:	n/a	n/a
40	POLR2A	chr5:43018989-43020892	HL-60	blood:	n/a	n/a
41	POLR2A	chr5:43019525-43020817	GM18951	blood:	n/a	n/a
42	POLR2A	chr5:43019786-43020753	PANC-1	pancreas:	n/a	n/a
43	MAFK	chr5:43019334-43020513	HepG2	liver:	n/a	n/a
44	POLR2A	chr5:43019803-43020684	HepG2	liver:	n/a	n/a
45	CEBPB	chr5:43019791-43020734	A549	lung:	n/a	n/a
46	CHD1	chr5:43018993-43020682	GM12878	blood:	n/a	n/a
47	SP1	chr5:43019999-43020469	H1-hESC	embryonic stem cell:	n/a	n/a
48	POLR2A	chr5:43017296-43020789	GM12891	blood:	n/a	n/a
49	CTCF	chr5:43019900-43020050	AG04449	skin:	n/a	n/a
50	RAD21	chr5:43019594-43020814	Hela-S3	cervix:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:43015093..43022227-chr5:43063428..43069370,31	MCF-7	breast:
2	chr5:43014739..43026335-chr5:43034830..43045515,33	MCF-7	breast:
3	chr5:43016691..43021968-chr5:43036071..43044426,17	MCF-7	breast:
4	chr11:61197138..61197795-chr5:43019616..43020599,2	Hela-S3	cervix:
5	chr5:43019736..43020278-chr5:43039607..43040176,2	MCF-7	breast:
6	chr5:43017018..43021813-chr5:43064660..43069370,12	MCF-7	breast:
7	chr5:43015314..43020034-chr5:43032196..43035172,5	MCF-7	breast:
8	chr5:43017490..43020535-chr5:43119535..43122363,3	MCF-7	breast:
9	chr5:43019686..43022766-chr5:43029707..43032686,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000177738	TF binding region
ENSG00000256591	Chromatin interaction
ENSG00000149532	Chromatin interaction
ENSG00000172262	Chromatin interaction
ENSG00000272382	Chromatin interaction
ENSG00000167985	Chromatin interaction
ENSG00000177721	Chromatin interaction
ENSG00000215068	Chromatin interaction
ENSG00000177738	Chromatin interaction

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10064003	0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10522	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10941604	0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10941605	0.82[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs11747435	0.89[ASN][1000 genomes]
rs11747714	0.95[JPT][hapmap]
rs11748821	0.81[EUR][1000 genomes]
rs11958008	0.89[ASN][1000 genomes]
rs12697439	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13169690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13170208	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13171133	0.86[ASN][1000 genomes]
rs13178479	0.95[ASN][1000 genomes]
rs13179934	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1542369	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1574407	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs160709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1618891	0.90[JPT][hapmap]
rs1624415	0.90[JPT][hapmap];0.80[YRI][hapmap]
rs178415	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs186323	0.80[ASN][1000 genomes]
rs186324	0.84[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1902101	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2100473	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2124069	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs222060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2247280	0.83[AMR][1000 genomes]
rs2253450	0.89[ASN][1000 genomes]
rs2329994	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2329995	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2444779	0.88[YRI][hapmap]
rs2548334	0.83[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2548336	0.85[AFR][1000 genomes]
rs2548339	0.80[ASN][1000 genomes]
rs2548345	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2548349	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2548350	0.96[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2548353	0.89[CEU][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2548356	0.89[CEU][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2548373	0.84[AMR][1000 genomes]
rs2603295	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2603620	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2603634	0.84[AMR][1000 genomes]
rs2603636	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2603644	0.95[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes]
rs2603656	0.83[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs2882295	0.91[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs2924817	0.81[AMR][1000 genomes]
rs309909	0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs309914	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs309923	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs309924	0.83[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs309925	0.83[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs309926	0.84[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs309927	0.84[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs309948	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs309950	0.95[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs309951	0.83[ASN][1000 genomes]
rs316395	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs316396	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs316400	0.87[ASN][1000 genomes]
rs316402	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs316403	0.82[ASN][1000 genomes]
rs316404	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs316408	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs316413	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs316414	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs316416	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs316419	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs316422	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3909456	0.95[JPT][hapmap]
rs4033115	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4092293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4092294	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4296812	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs512921	0.91[JPT][hapmap]
rs515970	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs543569	0.87[ASN][1000 genomes]
rs557076	0.90[JPT][hapmap]
rs565761	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs567884	0.90[JPT][hapmap]
rs613825	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6451660	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6451661	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6451662	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6875214	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6879130	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6892422	0.90[JPT][hapmap]
rs724430	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs768441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7715065	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs782971	0.90[JPT][hapmap]
rs782978	0.90[JPT][hapmap];0.84[YRI][hapmap]
rs782984	0.90[JPT][hapmap]
rs903391	0.91[JPT][hapmap];0.84[YRI][hapmap]
rs9292862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993554	chr5:42720939-43251863	Bivalent/Poised TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	298 gene(s)	inside rSNPs	diseases
2	nsv462126	chr5:42728831-43237188	Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
3	nsv597925	chr5:42728831-43237188	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
4	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
5	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
6	nsv534185	chr5:42804840-43067088	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	165 gene(s)	inside rSNPs	diseases
7	nsv1029288	chr5:42928085-43047323	Flanking Bivalent TSS/Enh Active TSS Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	120 gene(s)	inside rSNPs	diseases
8	nsv968169	chr5:42956713-43043472	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	116 gene(s)	inside rSNPs	diseases
9	nsv1024636	chr5:42959979-43295782	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
10	nsv537739	chr5:42959979-43295782	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
11	nsv880447	chr5:42967215-43030798	Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	97 gene(s)	inside rSNPs	diseases
12	nsv881640	chr5:42978644-43028221	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
13	nsv880415	chr5:42978644-43030798	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43016400-43020800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:43016800-43020800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
3	chr5:43017200-43020200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
4	chr5:43017200-43020600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:43017200-43020800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
6	chr5:43017400-43020200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
7	chr5:43017400-43020400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:43017400-43020400	Active TSS	Dnd41	blood
9	chr5:43017400-43020600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:43017400-43020600	Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr5:43017400-43020600	Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr5:43017400-43020600	Bivalent/Poised TSS	Left Ventricle	heart
13	chr5:43017400-43020600	Bivalent/Poised TSS	Psoas Muscle	Psoas
14	chr5:43017400-43020600	Active TSS	Right Ventricle	heart
15	chr5:43017400-43020600	Active TSS	Thymus	Thymus
16	chr5:43017400-43020600	Active TSS	HSMMtube	muscle
17	chr5:43017400-43021400	Active TSS	A549	lung
18	chr5:43017600-43020200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:43017600-43020200	Bivalent/Poised TSS	Fetal Kidney	kidney
20	chr5:43017600-43020400	Active TSS	Primary monocytes fromperipheralblood	blood
21	chr5:43017600-43020400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
22	chr5:43017600-43020400	Active TSS	Monocytes-CD14+_RO01746	blood
23	chr5:43017600-43020600	Active TSS	Primary B cells from peripheral blood	blood
24	chr5:43017600-43020600	Active TSS	Primary T cells from cord blood	blood
25	chr5:43017600-43020600	Active TSS	Primary T cells fromperipheralblood	blood
26	chr5:43017600-43020600	Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr5:43017600-43020600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
28	chr5:43017600-43020600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr5:43017600-43020600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
30	chr5:43017600-43020600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
31	chr5:43017600-43020600	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
32	chr5:43017600-43020600	Bivalent/Poised TSS	HepG2	liver
33	chr5:43017600-43020800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr5:43017600-43020800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr5:43017800-43020200	Bivalent/Poised TSS	Fetal Thymus	thymus
36	chr5:43017800-43020400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
37	chr5:43017800-43020400	Active TSS	HUVEC	blood vessel
38	chr5:43017800-43020600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr5:43017800-43020600	Active TSS	GM12878-XiMat	blood
40	chr5:43018000-43020400	Active TSS	Primary T helper cells fromperipheralblood	blood
41	chr5:43018000-43020400	Active TSS	Hela-S3	cervix
42	chr5:43018000-43020400	Active TSS	Osteobl	bone
43	chr5:43018000-43020600	Active TSS	Muscle Satellite Cultured Cells	--
44	chr5:43018000-43020600	Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr5:43018200-43020800	Active TSS	Colonic Mucosa	Colon
46	chr5:43018400-43020400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr5:43018400-43020600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr5:43018400-43020600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
49	chr5:43018400-43020600	Active TSS	Rectal Mucosa Donor 31	rectum
50	chr5:43018400-43020800	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach

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