Variant report

Variant rs2603656
Chromosome Location chr5:42992040-42992041
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:42987200-42992400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr5:42988400-42996200 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
3 chr5:42989400-42992600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr5:42990200-42992600 Bivalent/Poised TSS Duodenum Smooth Muscle Duodenum
5 chr5:42990200-42996000 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood
6 chr5:42990600-42992600 Flanking Active TSS K562 blood
7 chr5:42990800-42992200 Bivalent/Poised TSS Colonic Mucosa Colon
8 chr5:42990800-42992200 Active TSS Small Intestine intestine
9 chr5:42990800-42992400 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
10 chr5:42990800-42992400 Flanking Active TSS Hela-S3 cervix
11 chr5:42990800-42992600 Flanking Active TSS Primary hematopoietic stem cells blood
12 chr5:42990800-42993400 Bivalent/Poised TSS Brain Substantia Nigra brain
13 chr5:42990800-42993800 Active TSS Sigmoid Colon Sigmoid Colon
14 chr5:42990800-42996000 Bivalent/Poised TSS Rectal Smooth Muscle rectum
15 chr5:42991000-42992200 Flanking Active TSS Adipose Nuclei Adipose
16 chr5:42991000-42995600 Active TSS Right Ventricle heart
17 chr5:42991200-42992200 Flanking Active TSS Primary neutrophils fromperipheralblood blood
18 chr5:42991200-42992200 Bivalent/Poised TSS Stomach Smooth Muscle stomach
19 chr5:42991200-42995400 Active TSS NHLF lung
20 chr5:42991200-42995800 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
21 chr5:42991200-42995800 Active TSS Thymus Thymus
22 chr5:42991400-42992200 Flanking Active TSS Primary monocytes fromperipheralblood blood
23 chr5:42991400-42992200 Bivalent/Poised TSS Liver Liver
24 chr5:42991400-42992200 Bivalent/Poised TSS Brain Inferior Temporal Lobe brain
25 chr5:42991400-42992200 Bivalent/Poised TSS Esophagus oesophagus
26 chr5:42991400-42992400 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
27 chr5:42991400-42992400 Flanking Active TSS Placenta Placenta
28 chr5:42991400-42992600 Flanking Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
29 chr5:42991400-42992800 ZNF genes & repeats Lung lung
30 chr5:42991400-42993000 Bivalent/Poised TSS iPS DF 6.9 Cell Line embryonic stem cell
31 chr5:42991400-42993200 Bivalent/Poised TSS Pancreatic Islets Pancreatic Islet
32 chr5:42991400-42994600 Bivalent/Poised TSS Left Ventricle heart
33 chr5:42991400-42995400 Bivalent/Poised TSS Brain Cingulate Gyrus brain
34 chr5:42991400-42995400 Bivalent/Poised TSS Brain Hippocampus Middle brain
35 chr5:42991400-42995600 Active TSS Primary T helper memory cells from peripheral blood 2 blood
36 chr5:42991400-42995800 Active TSS Primary T helper naive cells from peripheral blood blood
37 chr5:42991400-42995800 Bivalent/Poised TSS Duodenum Mucosa Duodenum
38 chr5:42991600-42992200 Active TSS Primary T helper 17 cells PMA-I stimulated --
39 chr5:42991600-42992400 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
40 chr5:42991600-42992600 Flanking Bivalent TSS/Enh H1 Cell Line embryonic stem cell
41 chr5:42991600-42992600 Bivalent/Poised TSS Psoas Muscle Psoas
42 chr5:42991600-42993200 Bivalent/Poised TSS H9 Cell Line embryonic stem cell
43 chr5:42991600-42993200 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
44 chr5:42991600-42993400 Flanking Bivalent TSS/Enh Fetal Muscle Trunk muscle
45 chr5:42991600-42993400 Flanking Bivalent TSS/Enh Fetal Muscle Leg muscle
46 chr5:42991600-42993400 Active TSS Spleen Spleen
47 chr5:42991600-42993600 Flanking Bivalent TSS/Enh Fetal Adrenal Gland Adrenal Gland
48 chr5:42991600-42993800 Active TSS Primary T cells from cord blood blood
49 chr5:42991600-42993800 Active TSS Primary T helper memory cells from peripheral blood 1 blood
50 chr5:42991600-42994800 Bivalent/Poised TSS Brain Dorsolateral Prefrontal Cortex brain

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