Variant report

Variant	rs12697439
Chromosome Location	chr5:43009986-43009987
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:116)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:116 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr5:43007595-43010060	Hela-S3	cervix:	n/a	n/a
2	NFIC	chr5:43009807-43010209	HepG2	liver:	n/a	n/a
3	MYC	chr5:43009623-43010111	K562	blood:	n/a	n/a
4	CEBPB	chr5:43009178-43010197	MCF-7	breast:	n/a	n/a
5	POLR2A	chr5:43007338-43010590	PANC-1	pancreas:	n/a	n/a
6	POLR2A	chr5:43009129-43010153	SK-N-SH	brain:	n/a	n/a
7	IRF1	chr5:43009420-43010060	K562	blood:	n/a	chr5:43009577-43009591 chr5:43009577-43009591 chr5:43009576-43009589 chr5:43009572-43009593 chr5:43009576-43009596 chr5:43009576-43009590 chr5:43009576-43009589 chr5:43009578-43009589 chr5:43009575-43009589 chr5:43009576-43009589 chr5:43009575-43009592 chr5:43009578-43009592 chr5:43009577-43009590
8	MAX	chr5:43007456-43010047	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr5:43009442-43010531	HepG2	liver:	n/a	n/a
10	RFX5	chr5:43007460-43010092	Hela-S3	cervix:	n/a	n/a
11	MYC	chr5:43007402-43011171	NB4	blood:	n/a	n/a
12	POLR2A	chr5:43007525-43010794	NB4	blood:	n/a	n/a
13	CTCF	chr5:43009900-43010050	HMF	breast:	n/a	n/a
14	POLR2A	chr5:43007400-43010832	GM12878	blood:	n/a	n/a
15	POLR2A	chr5:43009095-43009996	GM12891	blood:	n/a	n/a
16	FOXA2	chr5:43009746-43010070	HepG2	liver:	n/a	n/a
17	CEBPB	chr5:43007613-43010152	IMR90	lung:	n/a	chr5:43008518-43008529
18	RELA	chr5:43007580-43010082	GM15510	blood:	n/a	n/a
19	POLR2A	chr5:43007337-43010908	GM18526	blood:	n/a	n/a
20	POLR2A	chr5:43007364-43011130	GM19099	blood:	n/a	n/a
21	MTA3	chr5:43009378-43011233	GM12878	blood:	n/a	n/a
22	CEBPB	chr5:43009837-43010081	HepG2	liver:	n/a	n/a
23	CEBPB	chr5:43009160-43010058	A549	lung:	n/a	n/a
24	POLR2A	chr5:43007407-43011245	Hela-S3	cervix:	n/a	n/a
25	MAX	chr5:43009631-43010008	K562	blood:	n/a	n/a
26	POLR2A	chr5:43007481-43010091	Hela-S3	cervix:	n/a	n/a
27	TEAD4	chr5:43009549-43010067	HepG2	liver:	n/a	n/a
28	RELA	chr5:43007501-43011195	GM12891	blood:	n/a	n/a
29	MYC	chr5:43009927-43010101	HepG2	liver:	n/a	n/a
30	HNF4A	chr5:43009840-43010379	HepG2	liver:	n/a	chr5:43010227-43010235 chr5:43010226-43010234 chr5:43010219-43010234
31	POLR2A	chr5:43009969-43010505	HepG2	liver:	n/a	n/a
32	POLR2A	chr5:43007367-43010979	GM12892	blood:	n/a	n/a
33	SMARCC1	chr5:43007370-43010378	Hela-S3	cervix:	n/a	n/a
34	STAT3	chr5:43007718-43010316	GM12878	blood:	n/a	chr5:43009001-43009013 chr5:43009578-43009589 chr5:43009254-43009262
35	MAX	chr5:43007422-43010109	NB4	blood:	n/a	n/a
36	POLR2A	chr5:43009273-43009988	K562	blood:	n/a	n/a
37	MAZ	chr5:43007592-43010214	Hela-S3	cervix:	n/a	n/a
38	POLR2A	chr5:43007275-43011089	GM12892	blood:	n/a	n/a
39	MYBL2	chr5:43009426-43010082	HepG2	liver:	n/a	n/a
40	POLR2A	chr5:43009603-43010394	HUVEC	blood vessel:	n/a	n/a
41	USF2	chr5:43007635-43010075	Hela-S3	cervix:	n/a	n/a
42	POLR2A	chr5:43009124-43010381	GM12892	blood:	n/a	n/a
43	POLR2A	chr5:43007600-43010100	K562	blood:	n/a	n/a
44	CEBPB	chr5:43009816-43010070	K562	blood:	n/a	n/a
45	RELA	chr5:43007555-43010223	GM10847	blood:	n/a	n/a
46	MAX	chr5:43007255-43010053	A549	lung:	n/a	n/a
47	POLR2A	chr5:43009482-43010525	HepG2	liver:	n/a	n/a
48	RUNX3	chr5:43007352-43009995	GM12878	blood:	n/a	n/a
49	POLR2A	chr5:43007238-43011163	GM12878	blood:	n/a	n/a
50	GTF2F1	chr5:43007514-43010133	Hela-S3	cervix:	n/a	n/a

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:62608655..62609646-chr5:43009445..43010034,2	NB4	blood:
2	chr5:43009440..43010973-chr5:43027450..43029658,2	MCF-7	breast:
3	chr5:42908654..42910895-chr5:43006900..43010047,5	MCF-7	breast:
4	chr2:232530812..232531657-chr5:43009656..43010648,2	Hela-S3	cervix:
5	chr5:42996039..42998077-chr5:43007869..43010510,2	MCF-7	breast:
6	chr5:43006860..43010287-chr5:43063692..43067440,8	K562	blood:
7	chr5:43008745..43011043-chr5:43025523..43027908,2	K562	blood:
8	chr5:43009718..43010473-chr5:43017691..43018496,2	Hela-S3	cervix:
9	chr5:41858867..41861426-chr5:43009217..43011345,2	K562	blood:
10	chr5:42976709..42979278-chr5:43008290..43010781,3	K562	blood:
11	chr5:43006330..43010322-chr5:43119527..43123237,8	MCF-7	breast:
12	chr5:43005892..43011349-chr5:43037590..43043804,20	K562	blood:
13	chr5:42928813..42931600-chr5:43007922..43010335,2	MCF-7	breast:
14	chr5:43006162..43011722-chr5:43063736..43068779,9	MCF-7	breast:
15	chr5:43007851..43010366-chr5:43021276..43023527,2	K562	blood:
16	chr5:42912159..42915403-chr5:43007665..43011079,4	MCF-7	breast:
17	chr5:43008478..43012422-chr5:43036002..43039064,3	MCF-7	breast:
18	chr11:62420333..62420943-chr5:43009548..43010277,2	Hela-S3	cervix:
19	chr5:43006765..43010626-chr5:43063692..43068627,9	K562	blood:
20	chr5:43005189..43014948-chr5:43062554..43069130,17	MCF-7	breast:
21	chr5:42911324..42913004-chr5:43008845..43010689,2	K562	blood:
22	chr5:42908870..42911135-chr5:43009033..43010803,2	K562	blood:
23	chr5:43008295..43011216-chr5:43016929..43019962,5	K562	blood:
24	chr5:43005322..43013124-chr5:43037748..43043287,15	K562	blood:

No data

Variant related genes	Relation type
ENSG00000271788	TF binding region
ENSG00000177721	Chromatin interaction
ENSG00000251131	Chromatin interaction
ENSG00000177738	Chromatin interaction
ENSG00000215068	Chromatin interaction
ENSG00000251656	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000185085	Chromatin interaction
ENSG00000172262	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10064003	0.96[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10522	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10941604	0.84[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10941605	0.88[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11747435	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11747714	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs11748821	0.87[EUR][1000 genomes]
rs11958008	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13169690	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13170208	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13171133	0.89[ASN][1000 genomes]
rs13178479	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13179934	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1542369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1574407	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs160709	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1618891	0.90[JPT][hapmap]
rs1624415	0.90[JPT][hapmap]
rs178415	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs186324	0.81[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1902101	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2100473	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2124069	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs222060	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2247280	0.90[AMR][1000 genomes]
rs2253450	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2329994	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2329995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2548334	0.80[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2548345	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2548349	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2548350	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2548353	0.88[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2548356	0.88[CEU][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2548373	0.91[AMR][1000 genomes]
rs2603620	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2603634	0.91[AMR][1000 genomes]
rs2603644	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs2603656	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2882295	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs2924817	0.88[AMR][1000 genomes]
rs309909	0.96[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs309914	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs309921	0.86[AMR][1000 genomes]
rs309923	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs309924	0.88[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs309925	0.80[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs309926	0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs309927	0.81[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs309948	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs309950	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs309951	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs316395	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs316396	0.87[ASN][1000 genomes]
rs316400	0.84[ASN][1000 genomes]
rs316404	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs316408	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs316413	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs316414	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs316416	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs316419	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs316422	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3909456	0.95[JPT][hapmap]
rs4033115	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4092293	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4092294	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4296812	0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs512921	0.91[JPT][hapmap]
rs515970	0.84[ASN][1000 genomes]
rs543569	0.84[ASN][1000 genomes]
rs557076	0.90[JPT][hapmap]
rs565761	0.84[ASN][1000 genomes]
rs567884	0.90[JPT][hapmap]
rs613825	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs643307	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6451660	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6451661	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6451662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6875214	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6879130	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6892422	0.90[JPT][hapmap]
rs724430	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs768441	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7715065	0.80[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs782971	0.90[JPT][hapmap]
rs782978	0.90[JPT][hapmap]
rs782984	0.90[JPT][hapmap]
rs903391	0.91[JPT][hapmap]
rs9292862	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993554	chr5:42720939-43251863	Bivalent/Poised TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	298 gene(s)	inside rSNPs	diseases
2	nsv462126	chr5:42728831-43237188	Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
3	nsv597925	chr5:42728831-43237188	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
4	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
5	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
6	nsv534185	chr5:42804840-43067088	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	165 gene(s)	inside rSNPs	diseases
7	nsv1029288	chr5:42928085-43047323	Flanking Bivalent TSS/Enh Active TSS Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	120 gene(s)	inside rSNPs	diseases
8	nsv968169	chr5:42956713-43043472	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	116 gene(s)	inside rSNPs	diseases
9	nsv1024636	chr5:42959979-43295782	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
10	nsv537739	chr5:42959979-43295782	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
11	nsv880447	chr5:42967215-43030798	Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	97 gene(s)	inside rSNPs	diseases
12	nsv881640	chr5:42978644-43028221	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
13	nsv880415	chr5:42978644-43030798	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43007200-43010000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
2	chr5:43007200-43010000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
3	chr5:43007200-43010200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:43007200-43010200	Bivalent/Poised TSS	Left Ventricle	heart
5	chr5:43007200-43010400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
6	chr5:43007200-43010800	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr5:43007400-43010000	Bivalent/Poised TSS	Liver	Liver
8	chr5:43007400-43010000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
9	chr5:43007400-43010000	Bivalent/Poised TSS	Brain Substantia Nigra	brain
10	chr5:43007400-43010000	Active TSS	Esophagus	oesophagus
11	chr5:43007400-43010200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
12	chr5:43007400-43010400	Active TSS	Sigmoid Colon	Sigmoid Colon
13	chr5:43007400-43010600	Bivalent/Poised TSS	Psoas Muscle	Psoas
14	chr5:43007400-43010800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
15	chr5:43007600-43010000	Active TSS	Primary T helper naive cells from peripheral blood	blood
16	chr5:43007600-43010000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
17	chr5:43007600-43010000	Active TSS	Primary T killer memory cells from peripheral blood	blood
18	chr5:43007600-43010000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:43007600-43010000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
20	chr5:43007600-43010000	Active TSS	Thymus	Thymus
21	chr5:43007800-43010000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr5:43007800-43010000	Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr5:43007800-43010000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
24	chr5:43007800-43010000	Active TSS	Duodenum Mucosa	Duodenum
25	chr5:43007800-43010200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
26	chr5:43007800-43010200	Active TSS	Right Ventricle	heart
27	chr5:43007800-43010200	Active TSS	NHLF	lung
28	chr5:43008000-43010400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
29	chr5:43008000-43010600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
30	chr5:43008200-43011200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr5:43008600-43010000	Active TSS	Muscle Satellite Cultured Cells	--
32	chr5:43008600-43010000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr5:43008800-43010000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
34	chr5:43008800-43010000	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
35	chr5:43008800-43010000	Bivalent/Poised TSS	Fetal Lung	lung
36	chr5:43008800-43010000	Active TSS	Placenta	Placenta
37	chr5:43008800-43010200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
38	chr5:43008800-43010200	Weak transcription	Spleen	Spleen
39	chr5:43008800-43010200	Flanking Active TSS	NH-A	brain
40	chr5:43008800-43010400	Weak transcription	Lung	lung
41	chr5:43008800-43010600	Active TSS	Colonic Mucosa	Colon
42	chr5:43008800-43010800	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
43	chr5:43009000-43010200	Weak transcription	Gastric	stomach
44	chr5:43009000-43010600	Active TSS	Right Atrium	heart
45	chr5:43009000-43011400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
46	chr5:43009000-43016200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr5:43009000-43016400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr5:43009000-43016600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr5:43009000-43017600	Weak transcription	Pancreas	Pancrea
50	chr5:43009200-43010000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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