Variant report

Variant	rs34043521
Chromosome Location	chr21:16127790-16127791
allele	AT/GC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr21:16127270-16127881	K562	blood:	n/a	n/a
2	IRF1	chr21:16123418-16127931	K562	blood:	n/a	n/a
3	EP300	chr21:16123999-16128837	K562	blood:	n/a	chr21:16124804-16124818 chr21:16125052-16125066 chr21:16124948-16124962 chr21:16125293-16125303 chr21:16124761-16124775 chr21:16124954-16124968
4	TBL1XR1	chr21:16124056-16127914	K562	blood:	n/a	n/a
5	POLR2A	chr21:16124304-16127927	K562	blood:	n/a	n/a
6	POLR2A	chr21:16111919-16132315	K562	blood:	n/a	n/a
7	TEAD4	chr21:16127150-16127875	K562	blood:	n/a	n/a
8	SPI1	chr21:16127445-16127799	K562	blood:	n/a	n/a
9	SPI1	chr21:16127534-16127836	HL-60	blood:	n/a	n/a
10	UBTF	chr21:16127494-16127812	K562	blood:	n/a	n/a
11	ATF1	chr21:16127549-16127809	K562	blood:	n/a	n/a
12	POLR2A	chr21:16124179-16128571	K562	blood:	n/a	n/a
13	JUND	chr21:16125723-16127802	K562	blood:	n/a	n/a
14	ARID3A	chr21:16127322-16127905	K562	blood:	n/a	n/a
15	UBTF	chr21:16127239-16127904	K562	blood:	n/a	n/a
16	ELF1	chr21:16127499-16127833	K562	blood:	n/a	n/a
17	GATA1	chr21:16123409-16131660	K562	blood:	n/a	chr21:16124907-16124917 chr21:16124789-16124806 chr21:16124757-16124768 chr21:16125253-16125264 chr21:16124875-16124885
18	RCOR1	chr21:16127308-16127818	K562	blood:	n/a	n/a
19	POLR2A	chr21:16127598-16127805	K562	blood:	n/a	n/a
20	TBP	chr21:16127568-16127815	K562	blood:	n/a	n/a
21	MAZ	chr21:16127491-16127812	K562	blood:	n/a	n/a
22	IRF1	chr21:16124018-16128861	K562	blood:	n/a	n/a
23	POLR2A	chr21:16124249-16127902	K562	blood:	n/a	n/a
24	POLR2A	chr21:16123269-16128381	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16123411..16124918-chr21:16127561..16129848,2	K562	blood:
2	chr21:16053123..16056103-chr21:16127212..16129572,2	K562	blood:

Variant related genes	Relation type
ENSG00000232884	TF binding region
POLR2CP	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1882871	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1882872	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1882874	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2142229	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2178897	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2403805	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2822900	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2822903	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2822906	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7275532	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7275823	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7280121	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7280294	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7281062	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7282883	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7283842	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7283843	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7283943	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8130955	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8134576	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs954825	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs954826	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9636595	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9636843	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9977329	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9983631	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16125000-16133000	Weak transcription	Primary B cells from cord blood	blood
2	chr21:16126400-16135200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr21:16126600-16128200	Enhancers	Dnd41	blood
4	chr21:16127600-16128800	Active TSS	K562	blood

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