Variant report

Variant	rs954826
Chromosome Location	chr21:16134203-16134204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16131213..16134500-chr21:16143323..16145254,3	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AF165138.7.1-3	chr21:16133802-16134472	XLOC_014003
2	lnc-AF165138.7.1-3	chr21:16134080-16134472	XLOC_014003
3	lnc-AF127577.1-6	chr21:16134031-16134472	XLOC_013862
4	lnc-AF127577.1-6	chr21:16132882-16134564	NONHSAT081173
5	lnc-AF165138.7.1-3	chr21:16133991-16134472	NONHSAT081174
6	lnc-AF165138.7.1-3	chr21:16134031-16134472	ENSG00000226751.2

No data

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1556282	0.85[EUR][1000 genomes]
rs1882871	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1882872	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1882873	0.80[CHB][hapmap];0.80[EUR][1000 genomes]
rs1882874	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2142229	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2178897	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2403805	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2822891	0.85[CHB][hapmap]
rs2822892	0.84[CHB][hapmap]
rs2822894	0.80[CHB][hapmap]
rs2822900	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2822902	0.80[CEU][hapmap];0.89[CHB][hapmap];0.81[EUR][1000 genomes]
rs2822903	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2822906	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34043521	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36073527	0.80[EUR][1000 genomes]
rs7275532	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7275790	0.89[CHB][hapmap];0.81[EUR][1000 genomes]
rs7275823	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7277937	0.87[CEU][hapmap];0.89[CHB][hapmap]
rs7280121	0.88[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7280294	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7281062	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7282883	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7283842	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7283843	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7283943	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8130955	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8132820	0.84[CHD][hapmap]
rs8133806	0.80[CHB][hapmap];0.83[EUR][1000 genomes]
rs8134576	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs954825	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9636594	0.80[CHB][hapmap];0.82[EUR][1000 genomes]
rs9636595	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9636841	0.80[CEU][hapmap];0.89[CHB][hapmap];0.81[EUR][1000 genomes]
rs9636842	0.81[EUR][1000 genomes]
rs9636843	0.84[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9977329	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9983631	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16126400-16135200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr21:16132000-16135000	Weak transcription	Right Atrium	heart
3	chr21:16132800-16135000	Enhancers	Primary B cells from peripheral blood	blood
4	chr21:16133600-16135600	Active TSS	Brain Hippocampus Middle	brain
5	chr21:16133800-16134800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr21:16133800-16135000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr21:16133800-16135000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr21:16133800-16135600	Active TSS	Duodenum Mucosa	Duodenum
9	chr21:16134000-16135200	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr21:16134000-16136000	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr21:16134000-16136200	Flanking Active TSS	Dnd41	blood
12	chr21:16134000-16136400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr21:16134200-16134600	Flanking Active TSS	GM12878-XiMat	blood
14	chr21:16134200-16135000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr21:16134200-16135200	Active TSS	K562	blood
16	chr21:16134200-16135400	Active TSS	Fetal Muscle Leg	muscle

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