Variant report

Variant	rs2822906
Chromosome Location	chr21:16134783-16134784
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AF127577.1-6	chr21:16134725-16135637	NONHSAT081173

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1556282	0.86[EUR][1000 genomes]
rs1882871	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1882872	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1882873	0.81[EUR][1000 genomes]
rs1882874	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2142229	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2178897	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2403805	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2822900	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2822902	0.81[EUR][1000 genomes]
rs2822903	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34043521	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36073527	0.81[EUR][1000 genomes]
rs56216385	0.81[EUR][1000 genomes]
rs7275532	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7275790	0.81[EUR][1000 genomes]
rs7275823	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7277937	0.80[EUR][1000 genomes]
rs7280121	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7280294	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7281062	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7282883	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7283842	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7283843	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7283943	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8130955	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8133806	0.84[EUR][1000 genomes]
rs8134576	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs954825	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs954826	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9636594	0.83[EUR][1000 genomes]
rs9636595	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9636841	0.81[EUR][1000 genomes]
rs9636842	0.81[EUR][1000 genomes]
rs9636843	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9977329	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9983631	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16126400-16135200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr21:16132000-16135000	Weak transcription	Right Atrium	heart
3	chr21:16132800-16135000	Enhancers	Primary B cells from peripheral blood	blood
4	chr21:16133600-16135600	Active TSS	Brain Hippocampus Middle	brain
5	chr21:16133800-16134800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr21:16133800-16135000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr21:16133800-16135000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr21:16133800-16135600	Active TSS	Duodenum Mucosa	Duodenum
9	chr21:16134000-16135200	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr21:16134000-16136000	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr21:16134000-16136200	Flanking Active TSS	Dnd41	blood
12	chr21:16134000-16136400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr21:16134200-16135000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr21:16134200-16135200	Active TSS	K562	blood
15	chr21:16134200-16135400	Active TSS	Fetal Muscle Leg	muscle
16	chr21:16134400-16135000	Enhancers	Primary hematopoietic stem cells	blood
17	chr21:16134600-16135200	Active TSS	GM12878-XiMat	blood

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