Variant report

Variant	rs8133806
Chromosome Location	chr21:16133235-16133236
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16131213..16134500-chr21:16143323..16145254,3	MCF-7	breast:
2	chr21:16131494..16133536-chr21:16134150..16136035,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AF127577.1-6	chr21:16132882-16134564	NONHSAT081173

Variant related genes	Relation type
ENSG00000226751	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1556282	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1882871	0.80[CHB][hapmap];0.84[EUR][1000 genomes]
rs1882872	0.80[CHB][hapmap];0.84[EUR][1000 genomes]
rs1882873	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1882874	0.80[CHB][hapmap];0.85[EUR][1000 genomes]
rs2142229	0.85[EUR][1000 genomes]
rs2178897	0.85[EUR][1000 genomes]
rs2403805	0.80[CHB][hapmap];0.85[EUR][1000 genomes]
rs2822891	0.91[CEU][hapmap];0.95[CHB][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2822892	0.91[CEU][hapmap];0.95[CHB][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2822894	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2822897	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2822900	0.80[CHB][hapmap];0.81[EUR][1000 genomes]
rs2822902	0.85[CEU][hapmap];0.95[CHB][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2822903	0.80[CHB][hapmap];0.81[EUR][1000 genomes]
rs2822905	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2822906	0.84[EUR][1000 genomes]
rs36073527	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56216385	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7275532	0.89[CHB][hapmap]
rs7275790	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7275823	0.82[EUR][1000 genomes]
rs7277937	0.92[CEU][hapmap];0.90[CHB][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7280121	0.89[CHB][hapmap];0.85[EUR][1000 genomes]
rs7280294	0.85[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs7281062	0.84[EUR][1000 genomes]
rs7282883	0.80[CHB][hapmap];0.87[EUR][1000 genomes]
rs7283842	0.82[EUR][1000 genomes]
rs7283843	0.82[EUR][1000 genomes]
rs7283943	0.89[CHB][hapmap];0.81[EUR][1000 genomes]
rs8130955	0.80[CHB][hapmap];0.85[EUR][1000 genomes]
rs8134576	0.80[CHB][hapmap];0.84[EUR][1000 genomes]
rs954825	0.86[EUR][1000 genomes]
rs954826	0.80[CHB][hapmap];0.83[EUR][1000 genomes]
rs9636594	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9636595	0.89[CHB][hapmap];0.85[EUR][1000 genomes]
rs9636841	0.85[CEU][hapmap];0.95[CHB][hapmap];0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9636842	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9636843	0.89[CHB][hapmap];0.85[EUR][1000 genomes]
rs9647058	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9977329	0.85[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs9983631	0.81[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16126400-16135200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr21:16131600-16133800	Active TSS	K562	blood
3	chr21:16132000-16135000	Weak transcription	Right Atrium	heart
4	chr21:16132800-16135000	Enhancers	Primary B cells from peripheral blood	blood
5	chr21:16133000-16134000	Enhancers	Primary B cells from cord blood	blood
6	chr21:16133200-16134000	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links