Variant report

Variant	rs2822903
Chromosome Location	chr21:16126012-16126013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr21:16125983-16126476	K562	blood:	n/a	n/a
2	IRF1	chr21:16123418-16127931	K562	blood:	n/a	n/a
3	POLR2A	chr21:16125465-16126604	K562	blood:	n/a	n/a
4	MAX	chr21:16125734-16126500	K562	blood:	n/a	n/a
5	TBL1XR1	chr21:16125832-16126637	K562	blood:	n/a	n/a
6	TEAD4	chr21:16125908-16126715	K562	blood:	n/a	n/a
7	STAT2	chr21:16125763-16126595	K562	blood:	n/a	n/a
8	EP300	chr21:16123999-16128837	K562	blood:	n/a	chr21:16124804-16124818 chr21:16125052-16125066 chr21:16124948-16124962 chr21:16125293-16125303 chr21:16124761-16124775 chr21:16124954-16124968
9	POLR2A	chr21:16125706-16126487	K562	blood:	n/a	n/a
10	TBL1XR1	chr21:16124056-16127914	K562	blood:	n/a	n/a
11	HEY1	chr21:16125690-16126410	K562	blood:	n/a	n/a
12	ATF1	chr21:16126002-16126607	K562	blood:	n/a	n/a
13	UBTF	chr21:16125686-16126634	K562	blood:	n/a	n/a
14	POLR2A	chr21:16124304-16127927	K562	blood:	n/a	n/a
15	MAFK	chr21:16125700-16126599	K562	blood:	n/a	n/a
16	MYC	chr21:16125647-16126727	K562	blood:	n/a	n/a
17	POLR2A	chr21:16111919-16132315	K562	blood:	n/a	n/a
18	GATA2	chr21:16125995-16126612	K562	blood:	n/a	n/a
19	TBP	chr21:16125915-16126629	K562	blood:	n/a	n/a
20	RCOR1	chr21:16125595-16126729	K562	blood:	n/a	n/a
21	JUN	chr21:16125992-16126682	K562	blood:	n/a	n/a
22	NR2F2	chr21:16126009-16126708	K562	blood:	n/a	n/a
23	STAT5A	chr21:16125951-16126569	K562	blood:	n/a	n/a
24	STAT1	chr21:16125906-16126546	K562	blood:	n/a	n/a
25	MYC	chr21:16125677-16126854	K562	blood:	n/a	n/a
26	POLR2A	chr21:16125963-16126654	K562	blood:	n/a	n/a
27	CREB1	chr21:16125937-16126764	K562	blood:	n/a	n/a
28	STAT5A	chr21:16125828-16126686	K562	blood:	n/a	n/a
29	POLR2A	chr21:16125402-16126675	K562	blood:	n/a	n/a
30	POLR2A	chr21:16124179-16128571	K562	blood:	n/a	n/a
31	JUND	chr21:16125723-16127802	K562	blood:	n/a	n/a
32	SMC3	chr21:16125923-16126445	K562	blood:	n/a	n/a
33	CUX1	chr21:16125426-16126489	K562	blood:	n/a	n/a
34	GATA2	chr21:16125909-16126594	K562	blood:	n/a	n/a
35	BCLAF1	chr21:16125976-16126568	K562	blood:	n/a	n/a
36	POLR2A	chr21:16124419-16126544	PBDE	blood:	n/a	n/a
37	GATA1	chr21:16124276-16127738	PBDE	blood:	n/a	chr21:16124907-16124917 chr21:16124789-16124806 chr21:16124757-16124768 chr21:16125253-16125264 chr21:16124875-16124885
38	NR2F2	chr21:16125979-16126547	K562	blood:	n/a	n/a
39	ELK1	chr21:16125978-16126487	K562	blood:	n/a	n/a
40	RCOR1	chr21:16125995-16126634	K562	blood:	n/a	n/a
41	TAL1	chr21:16125778-16126786	K562	blood:	n/a	n/a
42	ZNF384	chr21:16125869-16126490	K562	blood:	n/a	n/a
43	HMGN3	chr21:16125709-16126521	K562	blood:	n/a	n/a
44	UBTF	chr21:16125980-16126558	K562	blood:	n/a	n/a
45	POLR2A	chr21:16125734-16127038	K562	blood:	n/a	n/a
46	GTF2F1	chr21:16125987-16126548	K562	blood:	n/a	n/a
47	GATA1	chr21:16123409-16131660	K562	blood:	n/a	chr21:16124907-16124917 chr21:16124789-16124806 chr21:16124757-16124768 chr21:16125253-16125264 chr21:16124875-16124885
48	PML	chr21:16125945-16126588	K562	blood:	n/a	n/a
49	CCNT2	chr21:16125744-16126636	K562	blood:	n/a	n/a
50	CEBPD	chr21:16125947-16126731	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr21:16125155..16127761-chr21:16129688..16131759,3	K562	blood:
2	chr21:15916860..15919721-chr21:16123639..16127207,4	K562	blood:
3	chr21:15916876..15918776-chr21:16125268..16127207,2	K562	blood:

Variant related genes	Relation type
ENSG00000232884	TF binding region
POLR2CP	TF binding region
ENSG00000155307	Chromatin interaction
ENSG00000228600	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1556282	0.82[EUR][1000 genomes]
rs1882871	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1882872	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1882873	0.80[CHB][hapmap];0.83[EUR][1000 genomes]
rs1882874	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2142229	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2178897	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2403805	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2822891	0.85[CHB][hapmap];0.85[EUR][1000 genomes]
rs2822892	0.84[CHB][hapmap];0.85[EUR][1000 genomes]
rs2822894	0.81[CHB][hapmap];0.85[EUR][1000 genomes]
rs2822897	0.85[EUR][1000 genomes]
rs2822900	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822902	0.89[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs2822905	0.81[EUR][1000 genomes]
rs2822906	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34043521	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36073527	0.83[EUR][1000 genomes]
rs56216385	0.83[EUR][1000 genomes]
rs7275532	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7275790	0.89[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs7275823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7277937	0.84[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs7280121	0.96[CEU][hapmap];0.94[CHB][hapmap];0.84[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7280294	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7281062	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7282883	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7283842	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7283843	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7283943	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8130955	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8133806	0.80[CHB][hapmap];0.81[EUR][1000 genomes]
rs8134576	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs954825	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs954826	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9636594	0.80[CHB][hapmap];0.82[EUR][1000 genomes]
rs9636595	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9636841	0.89[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]
rs9636842	0.87[EUR][1000 genomes]
rs9636843	0.92[CEU][hapmap];0.94[CHB][hapmap];0.81[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9647058	0.85[EUR][1000 genomes]
rs9977329	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9983631	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16124400-16126600	Flanking Active TSS	Dnd41	blood
2	chr21:16124800-16126600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr21:16125000-16133000	Weak transcription	Primary B cells from cord blood	blood
4	chr21:16125600-16126400	Enhancers	Adipose Nuclei	Adipose
5	chr21:16125600-16126800	Flanking Active TSS	K562	blood
6	chr21:16125800-16126200	Active TSS	Colonic Mucosa	Colon
7	chr21:16125800-16126200	Enhancers	Fetal Thymus	thymus
8	chr21:16125800-16126400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr21:16125800-16126400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr21:16125800-16126400	Enhancers	Pancreas	Pancrea
11	chr21:16125800-16126400	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr21:16125800-16127000	Enhancers	GM12878-XiMat	blood
13	chr21:16126000-16126600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links