Variant report

Variant	rs2822900
Chromosome Location	chr21:16125559-16125560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr21:16123418-16127931	K562	blood:	n/a	n/a
2	POLR2A	chr21:16125465-16126604	K562	blood:	n/a	n/a
3	ARID3A	chr21:16123982-16125588	K562	blood:	n/a	n/a
4	EP300	chr21:16123999-16128837	K562	blood:	n/a	chr21:16124804-16124818 chr21:16125052-16125066 chr21:16124948-16124962 chr21:16125293-16125303 chr21:16124761-16124775 chr21:16124954-16124968
5	TBL1XR1	chr21:16124056-16127914	K562	blood:	n/a	n/a
6	POLR2A	chr21:16124304-16127927	K562	blood:	n/a	n/a
7	POLR2A	chr21:16111919-16132315	K562	blood:	n/a	n/a
8	POLR2A	chr21:16125402-16126675	K562	blood:	n/a	n/a
9	POLR2A	chr21:16124179-16128571	K562	blood:	n/a	n/a
10	CUX1	chr21:16125426-16126489	K562	blood:	n/a	n/a
11	POLR2A	chr21:16124419-16126544	PBDE	blood:	n/a	n/a
12	GATA1	chr21:16124276-16127738	PBDE	blood:	n/a	chr21:16124907-16124917 chr21:16124789-16124806 chr21:16124757-16124768 chr21:16125253-16125264 chr21:16124875-16124885
13	GATA1	chr21:16123409-16131660	K562	blood:	n/a	chr21:16124907-16124917 chr21:16124789-16124806 chr21:16124757-16124768 chr21:16125253-16125264 chr21:16124875-16124885
14	MAX	chr21:16125486-16126560	K562	blood:	n/a	n/a
15	JUN	chr21:16125365-16126721	K562	blood:	n/a	n/a
16	IRF1	chr21:16124018-16128861	K562	blood:	n/a	n/a
17	TEAD4	chr21:16125491-16126815	K562	blood:	n/a	n/a
18	POLR2A	chr21:16124249-16127902	K562	blood:	n/a	n/a
19	POLR2A	chr21:16123269-16128381	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr21:16125155..16127761-chr21:16129688..16131759,3	K562	blood:
2	chr21:15916860..15919721-chr21:16123639..16127207,4	K562	blood:
3	chr21:15916876..15918776-chr21:16125268..16127207,2	K562	blood:

Variant related genes	Relation type
POLR2CP	TF binding region
ENSG00000228600	Chromatin interaction
ENSG00000155307	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1556282	0.82[EUR][1000 genomes]
rs1882871	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.90[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1882872	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.90[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1882873	0.80[CHB][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs1882874	0.92[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2142229	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2178897	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2403805	0.92[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2822891	0.85[CHB][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs2822892	0.84[CHB][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs2822894	0.80[CHB][hapmap];0.86[EUR][1000 genomes]
rs2822897	0.87[EUR][1000 genomes]
rs2822902	0.84[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs2822903	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822905	0.80[EUR][1000 genomes]
rs2822906	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34043521	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36073527	0.83[EUR][1000 genomes]
rs56216385	0.82[EUR][1000 genomes]
rs7275532	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7275790	0.83[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs7275823	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7277937	0.87[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs7280121	0.92[CEU][hapmap];0.94[CHB][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7280294	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7281062	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7282883	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7283842	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7283843	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7283943	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8130955	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.90[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8132820	0.84[CHD][hapmap]
rs8133806	0.80[CHB][hapmap];0.81[EUR][1000 genomes]
rs8134576	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.90[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs954825	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs954826	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9636594	0.80[CHB][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs9636595	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9636841	0.84[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs9636842	0.86[EUR][1000 genomes]
rs9636843	0.88[CEU][hapmap];0.94[CHB][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9647058	0.87[EUR][1000 genomes]
rs9977329	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9983631	0.88[CEU][hapmap];0.88[CHB][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16122600-16125600	Active TSS	K562	blood
2	chr21:16124000-16125800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr21:16124400-16126600	Flanking Active TSS	Dnd41	blood
4	chr21:16124800-16126600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr21:16125000-16133000	Weak transcription	Primary B cells from cord blood	blood
6	chr21:16125200-16125800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr21:16125400-16125800	Active TSS	Duodenum Mucosa	Duodenum
8	chr21:16125400-16125800	Active TSS	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links