Variant report

Variant	rs7277937
Chromosome Location	chr21:16125167-16125168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr21:16123418-16127931	K562	blood:	n/a	n/a
2	ARID3A	chr21:16123982-16125588	K562	blood:	n/a	n/a
3	EP300	chr21:16123999-16128837	K562	blood:	n/a	chr21:16124804-16124818 chr21:16125052-16125066 chr21:16124948-16124962 chr21:16125293-16125303 chr21:16124761-16124775 chr21:16124954-16124968
4	TBL1XR1	chr21:16124056-16127914	K562	blood:	n/a	n/a
5	POLR2A	chr21:16124304-16127927	K562	blood:	n/a	n/a
6	POLR2A	chr21:16111919-16132315	K562	blood:	n/a	n/a
7	MAFK	chr21:16124389-16125337	K562	blood:	n/a	chr21:16125207-16125218 chr21:16125301-16125316 chr21:16124625-16124635
8	CEBPB	chr21:16124636-16125243	K562	blood:	n/a	chr21:16125051-16125062
9	TEAD4	chr21:16124368-16125204	K562	blood:	n/a	n/a
10	POLR2A	chr21:16124179-16128571	K562	blood:	n/a	n/a
11	POLR2A	chr21:16124419-16126544	PBDE	blood:	n/a	n/a
12	GATA1	chr21:16124276-16127738	PBDE	blood:	n/a	chr21:16124907-16124917 chr21:16124789-16124806 chr21:16124757-16124768 chr21:16125253-16125264 chr21:16124875-16124885
13	UBTF	chr21:16124822-16125300	K562	blood:	n/a	n/a
14	GATA1	chr21:16123409-16131660	K562	blood:	n/a	chr21:16124907-16124917 chr21:16124789-16124806 chr21:16124757-16124768 chr21:16125253-16125264 chr21:16124875-16124885
15	CEBPB	chr21:16124936-16125215	HepG2	liver:	n/a	chr21:16125051-16125062
16	IRF1	chr21:16124018-16128861	K562	blood:	n/a	n/a
17	POLR2A	chr21:16124817-16125253	K562	blood:	n/a	n/a
18	POLR2A	chr21:16124249-16127902	K562	blood:	n/a	n/a
19	POLR2A	chr21:16123269-16128381	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16125155..16127761-chr21:16129688..16131759,3	K562	blood:
2	chr21:15916860..15919721-chr21:16123639..16127207,4	K562	blood:

Variant related genes	Relation type
POLR2CP	TF binding region
ENSG00000228600	Chromatin interaction
ENSG00000155307	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1556282	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1882871	0.89[CHB][hapmap];0.83[EUR][1000 genomes]
rs1882872	0.89[CHB][hapmap];0.84[EUR][1000 genomes]
rs1882873	0.90[CHB][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1882874	0.81[CEU][hapmap];0.90[CHB][hapmap];0.83[EUR][1000 genomes]
rs2142229	0.83[EUR][1000 genomes]
rs2178897	0.83[EUR][1000 genomes]
rs2403805	0.81[CEU][hapmap];0.90[CHB][hapmap];0.83[EUR][1000 genomes]
rs2822891	0.95[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2822892	0.95[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2822894	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2822897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822900	0.87[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs2822902	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822903	0.84[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs2822905	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2822906	0.80[EUR][1000 genomes]
rs36073527	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56216385	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7275532	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs7275790	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7275823	0.83[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs7280121	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs7280294	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs7281062	0.83[EUR][1000 genomes]
rs7282883	0.84[CEU][hapmap];0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs7283943	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs8130955	0.89[CHB][hapmap];0.83[EUR][1000 genomes]
rs8133806	0.92[CEU][hapmap];0.90[CHB][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8134576	0.83[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs954825	0.82[EUR][1000 genomes]
rs954826	0.87[CEU][hapmap];0.89[CHB][hapmap]
rs9636594	0.91[CEU][hapmap];0.90[CHB][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9636595	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs9636841	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9636842	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9636843	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs9647058	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9977329	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes]
rs9983631	0.84[CEU][hapmap];0.84[CHB][hapmap];0.86[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16122600-16125600	Active TSS	K562	blood
2	chr21:16124000-16125800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr21:16124400-16125200	Enhancers	Primary B cells from peripheral blood	blood
4	chr21:16124400-16126600	Flanking Active TSS	Dnd41	blood
5	chr21:16124600-16125400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
6	chr21:16124800-16126600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr21:16125000-16133000	Weak transcription	Primary B cells from cord blood	blood

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