Variant report

Variant	rs1882872
Chromosome Location	chr21:16130573-16130574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr21:16129872-16130759	K562	blood:	n/a	n/a
2	RCOR1	chr21:16129901-16131406	K562	blood:	n/a	n/a
3	EP300	chr21:16130477-16130632	K562	blood:	n/a	n/a
4	POLR2A	chr21:16111919-16132315	K562	blood:	n/a	n/a
5	MAX	chr21:16129835-16130667	K562	blood:	n/a	n/a
6	MYC	chr21:16130082-16130749	K562	blood:	n/a	n/a
7	WRNIP1	chr21:16130349-16130634	GM12878	blood:	n/a	n/a
8	MAX	chr21:16130257-16130736	K562	blood:	n/a	n/a
9	MYC	chr21:16129731-16130781	K562	blood:	n/a	n/a
10	GATA1	chr21:16123409-16131660	K562	blood:	n/a	chr21:16124907-16124917 chr21:16124789-16124806 chr21:16124757-16124768 chr21:16125253-16125264 chr21:16124875-16124885
11	ARID3A	chr21:16130215-16130622	K562	blood:	n/a	n/a
12	MAFK	chr21:16130130-16130876	K562	blood:	n/a	chr21:16130678-16130698 chr21:16130681-16130695 chr21:16130680-16130696

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16125155..16127761-chr21:16129688..16131759,3	K562	blood:

Variant related genes	Relation type
ENSG00000232884	TF binding region
ENSG00000232884	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1556282	0.83[EUR][1000 genomes]
rs1882871	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1882873	0.80[CHB][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs1882874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2142229	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2178897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2403805	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2822891	0.85[CHB][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs2822892	0.84[CHB][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs2822894	0.80[CHB][hapmap];0.83[EUR][1000 genomes]
rs2822897	0.83[EUR][1000 genomes]
rs2822900	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.90[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2822902	0.85[CEU][hapmap];0.89[CHB][hapmap];0.85[EUR][1000 genomes]
rs2822903	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2822905	0.81[EUR][1000 genomes]
rs2822906	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34043521	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36073527	0.87[EUR][1000 genomes]
rs56216385	0.86[EUR][1000 genomes]
rs7275532	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7275790	0.84[CEU][hapmap];0.89[CHB][hapmap];0.84[EUR][1000 genomes]
rs7275823	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7277937	0.89[CHB][hapmap];0.84[EUR][1000 genomes]
rs7280121	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7280294	0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7281062	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7282883	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7283842	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7283843	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7283943	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8130955	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8132820	0.84[CHD][hapmap]
rs8133806	0.80[CHB][hapmap];0.84[EUR][1000 genomes]
rs8134576	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs954825	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs954826	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9636594	0.80[CHB][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs9636595	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9636841	0.85[CEU][hapmap];0.89[CHB][hapmap];0.85[EUR][1000 genomes]
rs9636842	0.85[EUR][1000 genomes]
rs9636843	0.96[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9647058	0.83[EUR][1000 genomes]
rs9977329	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9983631	0.88[CEU][hapmap];0.88[CHB][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16125000-16133000	Weak transcription	Primary B cells from cord blood	blood
2	chr21:16126400-16135200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr21:16128200-16133200	Weak transcription	Dnd41	blood
4	chr21:16129800-16131600	Transcr. at gene 5' and 3'	K562	blood

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