Variant report

Variant	rs954825
Chromosome Location	chr21:16133839-16133840
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16131213..16134500-chr21:16143323..16145254,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AF165138.7.1-3	chr21:16133802-16134472	XLOC_014003
2	lnc-AF127577.1-6	chr21:16132882-16134564	NONHSAT081173

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1556282	0.85[EUR][1000 genomes]
rs1882871	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1882872	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1882873	0.86[EUR][1000 genomes]
rs1882874	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2142229	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2178897	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2403805	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2822891	0.81[EUR][1000 genomes]
rs2822892	0.81[EUR][1000 genomes]
rs2822894	0.81[EUR][1000 genomes]
rs2822897	0.82[EUR][1000 genomes]
rs2822900	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2822902	0.83[EUR][1000 genomes]
rs2822903	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2822906	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34043521	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36073527	0.86[EUR][1000 genomes]
rs56216385	0.86[EUR][1000 genomes]
rs7275532	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7275790	0.82[EUR][1000 genomes]
rs7275823	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7277937	0.82[EUR][1000 genomes]
rs7280121	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7280294	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7281062	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7282883	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7283842	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7283843	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7283943	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8130955	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8133806	0.86[EUR][1000 genomes]
rs8134576	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs954826	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9636594	0.85[EUR][1000 genomes]
rs9636595	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9636841	0.83[EUR][1000 genomes]
rs9636842	0.83[EUR][1000 genomes]
rs9636843	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9647058	0.82[EUR][1000 genomes]
rs9977329	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9983631	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16126400-16135200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr21:16132000-16135000	Weak transcription	Right Atrium	heart
3	chr21:16132800-16135000	Enhancers	Primary B cells from peripheral blood	blood
4	chr21:16133000-16134000	Enhancers	Primary B cells from cord blood	blood
5	chr21:16133200-16134000	Enhancers	Dnd41	blood
6	chr21:16133400-16134200	Active TSS	GM12878-XiMat	blood
7	chr21:16133600-16135600	Active TSS	Brain Hippocampus Middle	brain
8	chr21:16133800-16134200	Flanking Active TSS	K562	blood
9	chr21:16133800-16134800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr21:16133800-16135000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr21:16133800-16135000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr21:16133800-16135600	Active TSS	Duodenum Mucosa	Duodenum

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