Variant report

Variant	rs34450398
Chromosome Location	chr6:46135283-46135284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs34109856	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399753	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62399754	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62399756	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62399757	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62399758	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62399759	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62400504	0.82[AMR][1000 genomes]
rs62400860	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62400861	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400862	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6909590	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs720180	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs723580	0.82[AMR][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46105600-46137400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:46106400-46138000	Weak transcription	Lung	lung
3	chr6:46111400-46137800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:46111600-46138000	Weak transcription	Fetal Thymus	thymus
5	chr6:46122800-46138000	Weak transcription	Pancreas	Pancrea
6	chr6:46123400-46137600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:46123800-46138000	Weak transcription	Fetal Brain Male	brain
8	chr6:46124000-46137400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:46124600-46137600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:46124800-46137800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:46126000-46138000	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:46126200-46137800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:46126200-46138000	Weak transcription	Fetal Intestine Large	intestine
14	chr6:46126400-46137800	Weak transcription	Fetal Intestine Small	intestine
15	chr6:46127000-46138000	Weak transcription	Ovary	ovary
16	chr6:46127200-46137800	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:46127400-46137800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:46127600-46137600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:46127600-46137600	Weak transcription	Fetal Kidney	kidney
20	chr6:46129400-46137800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:46129400-46138000	Weak transcription	Aorta	Aorta
22	chr6:46129600-46137600	Weak transcription	Brain Anterior Caudate	brain
23	chr6:46129600-46137800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:46129600-46138000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:46129800-46137400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:46129800-46138000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr6:46130400-46137600	Weak transcription	Brain Angular Gyrus	brain
28	chr6:46130400-46137800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:46130400-46137800	Weak transcription	Brain Substantia Nigra	brain
30	chr6:46130600-46138000	Weak transcription	Primary T cells from cord blood	blood
31	chr6:46132000-46135800	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:46133200-46137400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:46133400-46137400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr6:46133600-46138000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:46134000-46138000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:46134400-46137800	Weak transcription	Psoas Muscle	Psoas
37	chr6:46134600-46135600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr6:46134600-46137800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:46134800-46135600	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr6:46135200-46135600	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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