Variant report

Variant	rs6909590
Chromosome Location	chr6:46048241-46048242
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs34109856	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34450398	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62399753	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62399754	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62399756	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62399757	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62399758	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62399759	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62400504	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62400860	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62400861	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62400862	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62400863	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs720180	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs723580	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46044800-46048400	Active TSS	Fetal Intestine Large	intestine
2	chr6:46047400-46048600	Flanking Active TSS	Fetal Intestine Small	intestine
3	chr6:46047600-46048600	Bivalent Enhancer	Stomach Mucosa	stomach
4	chr6:46047800-46050000	Weak transcription	Psoas Muscle	Psoas
5	chr6:46048000-46049200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:46048200-46048800	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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