Variant report

Variant	rs62399757
Chromosome Location	chr6:46070284-46070285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs34109856	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34450398	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62399753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399754	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399758	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399759	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400504	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62400860	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400861	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62400862	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62400863	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6909590	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs720180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs723580	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46062800-46071200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:46063000-46080800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:46063200-46071400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:46064400-46072800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:46064600-46071400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:46066800-46076800	Weak transcription	Pancreas	Pancrea
7	chr6:46067800-46070800	Weak transcription	Brain Anterior Caudate	brain
8	chr6:46068000-46072000	Weak transcription	Spleen	Spleen
9	chr6:46068400-46071000	Weak transcription	Psoas Muscle	Psoas
10	chr6:46068400-46071200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:46068600-46070400	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:46068800-46070400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:46069800-46070800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:46069800-46071000	Weak transcription	GM12878-XiMat	blood
15	chr6:46069800-46071400	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:46069800-46072000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:46070000-46070600	Enhancers	HMEC	breast
18	chr6:46070200-46071000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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