Variant report

Variant	rs62399758
Chromosome Location	chr6:46072160-46072161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs34109856	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34450398	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62399753	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399756	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399757	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400504	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62400860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400861	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62400862	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62400863	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6909590	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs720180	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs723580	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46063000-46080800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:46064400-46072800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:46066800-46076800	Weak transcription	Pancreas	Pancrea
4	chr6:46070400-46073000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:46071000-46073000	Enhancers	Psoas Muscle	Psoas
6	chr6:46071000-46073200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:46071000-46073800	Enhancers	GM12878-XiMat	blood
8	chr6:46071400-46073400	Active TSS	Fetal Muscle Leg	muscle
9	chr6:46071400-46073800	Active TSS	Fetal Muscle Trunk	muscle
10	chr6:46071600-46072400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr6:46071600-46072600	Weak transcription	Fetal Thymus	thymus
12	chr6:46071600-46086800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:46072000-46072200	Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr6:46072000-46072200	Enhancers	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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