Variant report

Variant	rs62400863
Chromosome Location	chr6:46140589-46140590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs34109856	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34450398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399753	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62399754	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62399756	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62399757	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62399758	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62399759	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62400504	0.82[AMR][1000 genomes]
rs62400860	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62400861	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400862	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6909590	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs720180	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs723580	0.82[AMR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46139200-46140600	Enhancers	HSMMtube	muscle
2	chr6:46139200-46140800	Enhancers	Psoas Muscle	Psoas
3	chr6:46139200-46141600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:46139200-46141800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:46139200-46142000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:46139200-46142200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:46139200-46143600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:46139200-46160800	Weak transcription	Aorta	Aorta
9	chr6:46139400-46141600	Weak transcription	Brain Substantia Nigra	brain
10	chr6:46139400-46141600	Weak transcription	Fetal Thymus	thymus
11	chr6:46139400-46142200	Weak transcription	GM12878-XiMat	blood
12	chr6:46139400-46142400	Weak transcription	Primary T cells from cord blood	blood
13	chr6:46139600-46140600	Enhancers	Brain Anterior Caudate	brain
14	chr6:46139600-46140800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:46139600-46141000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:46139600-46141400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:46139600-46141600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:46139600-46141800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr6:46139600-46141800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:46140000-46141600	Weak transcription	Brain Angular Gyrus	brain
21	chr6:46140200-46140600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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