Variant report

Variant	rs62400860
Chromosome Location	chr6:46078561-46078562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs34109856	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34450398	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62399753	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399756	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399757	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62399759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400504	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62400861	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62400862	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62400863	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6909590	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs720180	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs723580	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72856999	1.00[AFR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46063000-46080800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:46071600-46086800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr6:46075800-46081200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:46075800-46081400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:46078200-46086800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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