Variant report

Variant	rs723580
Chromosome Location	chr6:46047640-46047641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs34450398	0.82[AMR][1000 genomes]
rs62399753	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62399754	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62399756	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62399757	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62399758	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62399759	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62400504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400860	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62400861	0.91[AMR][1000 genomes]
rs62400862	0.86[AMR][1000 genomes]
rs62400863	0.82[AMR][1000 genomes]
rs6909590	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs720180	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46044800-46048400	Active TSS	Fetal Intestine Large	intestine
2	chr6:46047400-46047800	Flanking Active TSS	Duodenum Mucosa	Duodenum
3	chr6:46047400-46047800	Enhancers	Pancreas	Pancrea
4	chr6:46047400-46047800	Enhancers	Psoas Muscle	Psoas
5	chr6:46047400-46048600	Flanking Active TSS	Fetal Intestine Small	intestine
6	chr6:46047600-46048600	Bivalent Enhancer	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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