Variant report

Variant	rs34473874
Chromosome Location	chr4:110465162-110465163
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10016533	0.82[EUR][1000 genomes]
rs10452150	0.85[EUR][1000 genomes]
rs13110999	0.85[EUR][1000 genomes]
rs13122093	0.85[EUR][1000 genomes]
rs13132816	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13133491	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13140373	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13147210	0.91[EUR][1000 genomes]
rs13151464	0.85[EUR][1000 genomes]
rs13151516	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs15821	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs33911248	0.85[EUR][1000 genomes]
rs34132975	0.85[EUR][1000 genomes]
rs34133579	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34368920	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34398932	0.90[EUR][1000 genomes]
rs34502105	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34660885	0.85[EUR][1000 genomes]
rs34710885	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34727629	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34813537	0.85[EUR][1000 genomes]
rs34851707	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34861128	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34953524	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35199349	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35313553	0.85[EUR][1000 genomes]
rs35329136	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35450490	0.85[EUR][1000 genomes]
rs35598950	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35699695	0.85[EUR][1000 genomes]
rs35865655	0.98[EUR][1000 genomes]
rs35866656	0.85[EUR][1000 genomes]
rs35950484	0.85[EUR][1000 genomes]
rs36102563	0.85[EUR][1000 genomes]
rs41277037	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6533434	0.96[EUR][1000 genomes]
rs66493839	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67066117	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs67727505	0.80[EUR][1000 genomes]
rs67923759	0.85[EUR][1000 genomes]
rs6828719	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6834685	0.96[EUR][1000 genomes]
rs71603034	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71603035	0.98[EUR][1000 genomes]
rs72672698	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv525385	chr4:110395146-110466413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110393800-110469200	Weak transcription	Stomach Mucosa	stomach
2	chr4:110409400-110467800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr4:110412400-110465400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr4:110412400-110466200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:110412400-110470600	Strong transcription	Fetal Thymus	thymus
6	chr4:110420200-110466400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:110423400-110480800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:110424800-110468400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:110425200-110468000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:110433400-110465800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr4:110434800-110469600	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr4:110435000-110468400	Strong transcription	Liver	Liver
13	chr4:110436800-110468000	Strong transcription	HSMM	muscle
14	chr4:110445800-110467800	Strong transcription	Adipose Nuclei	Adipose
15	chr4:110446000-110465800	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr4:110447200-110465400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:110448800-110479600	Weak transcription	Small Intestine	intestine
18	chr4:110448800-110480000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr4:110449600-110469400	Weak transcription	Pancreas	Pancrea
20	chr4:110452000-110467000	Weak transcription	Spleen	Spleen
21	chr4:110452000-110470200	Weak transcription	Esophagus	oesophagus
22	chr4:110452400-110480800	Weak transcription	Right Ventricle	heart
23	chr4:110453400-110466000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr4:110454000-110480600	Weak transcription	NHLF	lung
25	chr4:110454600-110480200	Weak transcription	A549	lung
26	chr4:110455000-110470800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr4:110455200-110466600	Weak transcription	K562	blood
28	chr4:110455400-110469400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr4:110455400-110469800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:110455600-110480600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr4:110456200-110467200	Weak transcription	Aorta	Aorta
32	chr4:110456200-110470800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr4:110456400-110465400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr4:110456400-110465800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:110456400-110466200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:110456400-110469000	Weak transcription	HMEC	breast
37	chr4:110456400-110469400	Weak transcription	Brain Angular Gyrus	brain
38	chr4:110456400-110472000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr4:110456400-110480600	Weak transcription	Brain Substantia Nigra	brain
40	chr4:110456400-110481600	Weak transcription	Fetal Heart	heart
41	chr4:110456600-110465800	Weak transcription	Colon Smooth Muscle	Colon
42	chr4:110456600-110469600	Weak transcription	Lung	lung
43	chr4:110456800-110465200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:110457200-110465200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr4:110457400-110466000	Strong transcription	Osteobl	bone
46	chr4:110457400-110467200	Weak transcription	Brain Germinal Matrix	brain
47	chr4:110457400-110468400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:110457400-110480600	Weak transcription	Right Atrium	heart
49	chr4:110458000-110465400	Strong transcription	Fetal Intestine Large	intestine
50	chr4:110458200-110466400	Strong transcription	Primary T cells fromperipheralblood	blood

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