Variant report

Variant	rs34953524
Chromosome Location	chr4:110444796-110444797
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110435524..110439030-chr4:110443269..110448028,4	K562	blood:
2	chr4:110435524..110438522-chr4:110443269..110445686,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10016533	0.90[EUR][1000 genomes]
rs10025781	0.87[EUR][1000 genomes]
rs10452150	0.93[EUR][1000 genomes]
rs13110999	0.93[EUR][1000 genomes]
rs13122093	0.93[EUR][1000 genomes]
rs13132816	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13133491	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13140373	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13147210	0.80[EUR][1000 genomes]
rs13151464	0.93[EUR][1000 genomes]
rs13151516	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs15821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs33911248	0.93[EUR][1000 genomes]
rs34132975	0.93[EUR][1000 genomes]
rs34133579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34320670	0.84[EUR][1000 genomes]
rs34368920	0.85[EUR][1000 genomes]
rs34473874	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34502105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34660885	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34710885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34727629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34813537	0.93[EUR][1000 genomes]
rs34851707	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34861128	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35199349	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35313553	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35329136	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35450490	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35598950	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35699695	0.93[EUR][1000 genomes]
rs35865655	0.87[EUR][1000 genomes]
rs35866656	0.93[EUR][1000 genomes]
rs35950484	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs36102563	0.93[EUR][1000 genomes]
rs41277037	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6533434	0.85[EUR][1000 genomes]
rs66493839	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67066117	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67727505	0.89[EUR][1000 genomes]
rs67923759	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6828719	0.87[EUR][1000 genomes]
rs6834685	0.85[EUR][1000 genomes]
rs71603034	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71603035	0.87[EUR][1000 genomes]
rs72672698	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7694710	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv525385	chr4:110395146-110466413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110393800-110469200	Weak transcription	Stomach Mucosa	stomach
2	chr4:110400200-110455400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:110409400-110467800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr4:110411400-110464600	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr4:110412400-110465400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:110412400-110466200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:110412400-110470600	Strong transcription	Fetal Thymus	thymus
8	chr4:110413400-110454800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:110416200-110454800	Weak transcription	Fetal Heart	heart
10	chr4:110416400-110452200	Weak transcription	Fetal Brain Male	brain
11	chr4:110416800-110449200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:110417000-110447400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:110417000-110448400	Weak transcription	Spleen	Spleen
14	chr4:110417000-110449200	Weak transcription	Hela-S3	cervix
15	chr4:110417000-110453400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:110417000-110453600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:110417000-110455800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr4:110417200-110448400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr4:110417800-110447400	Weak transcription	NHLF	lung
20	chr4:110418400-110448600	Weak transcription	Psoas Muscle	Psoas
21	chr4:110419000-110447400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr4:110420200-110466400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:110422400-110448600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:110422800-110448400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr4:110422800-110448600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr4:110423400-110454400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr4:110423400-110480800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr4:110424600-110457000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:110424800-110456000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr4:110424800-110456600	Strong transcription	Osteobl	bone
31	chr4:110424800-110468400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:110425000-110463800	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr4:110425200-110468000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:110425400-110464800	Strong transcription	Duodenum Mucosa	Duodenum
35	chr4:110426200-110449000	Weak transcription	A549	lung
36	chr4:110426200-110453800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr4:110426600-110456800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr4:110427200-110454800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:110427400-110464800	Strong transcription	Primary B cells from peripheral blood	blood
40	chr4:110428200-110464600	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr4:110428600-110449800	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr4:110429600-110446600	Weak transcription	Brain Germinal Matrix	brain
43	chr4:110429600-110448600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr4:110430400-110450800	Weak transcription	Brain Angular Gyrus	brain
45	chr4:110430400-110456600	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr4:110433400-110465800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr4:110434600-110449400	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr4:110434600-110456200	Strong transcription	NH-A	brain
49	chr4:110434600-110456400	Strong transcription	Placenta	Placenta
50	chr4:110434800-110469600	Strong transcription	Rectal Mucosa Donor 29	rectum

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