Variant report

Variant	rs7694710
Chromosome Location	chr4:110333941-110333942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10000545	0.93[CEU][hapmap]
rs10002595	0.93[CEU][hapmap]
rs10016533	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10025781	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10155127	0.93[CEU][hapmap]
rs10452150	0.92[EUR][1000 genomes]
rs10516558	0.86[CEU][hapmap]
rs11930655	0.93[CEU][hapmap]
rs11942291	0.93[CEU][hapmap]
rs11942858	0.86[CEU][hapmap]
rs12643055	0.93[CEU][hapmap]
rs13103034	0.86[CEU][hapmap]
rs13110999	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs13122093	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs13123618	0.93[CEU][hapmap]
rs13128221	0.86[CEU][hapmap]
rs13132816	0.86[EUR][1000 genomes]
rs13133491	0.86[EUR][1000 genomes]
rs13140373	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs13142698	0.92[CEU][hapmap]
rs13143825	0.86[CEU][hapmap]
rs13145066	0.86[CEU][hapmap]
rs13151464	0.92[EUR][1000 genomes]
rs13151516	0.86[EUR][1000 genomes]
rs1509314	0.93[CEU][hapmap]
rs1509315	0.86[CEU][hapmap]
rs15821	0.86[EUR][1000 genomes]
rs17040436	0.86[CEU][hapmap]
rs17040439	0.86[CEU][hapmap]
rs17040461	0.86[CEU][hapmap]
rs28681408	0.93[CEU][hapmap]
rs33911248	0.92[EUR][1000 genomes]
rs34132975	0.92[EUR][1000 genomes]
rs34133579	0.86[EUR][1000 genomes]
rs34320670	0.82[EUR][1000 genomes]
rs34502105	0.86[EUR][1000 genomes]
rs34660885	0.92[EUR][1000 genomes]
rs34710885	0.86[EUR][1000 genomes]
rs34727629	0.86[EUR][1000 genomes]
rs34813537	0.92[EUR][1000 genomes]
rs34851707	0.86[EUR][1000 genomes]
rs34861128	0.83[EUR][1000 genomes]
rs34953524	0.86[EUR][1000 genomes]
rs35199349	0.86[EUR][1000 genomes]
rs35313553	0.92[EUR][1000 genomes]
rs35329136	0.86[EUR][1000 genomes]
rs35450490	0.92[EUR][1000 genomes]
rs35598950	0.86[EUR][1000 genomes]
rs35699695	0.92[EUR][1000 genomes]
rs35829490	0.86[EUR][1000 genomes]
rs35866656	0.92[EUR][1000 genomes]
rs35950484	0.92[EUR][1000 genomes]
rs36102563	0.92[EUR][1000 genomes]
rs41277037	0.86[EUR][1000 genomes]
rs6533427	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6533434	0.81[EUR][1000 genomes]
rs66493839	0.86[EUR][1000 genomes]
rs67066117	0.82[EUR][1000 genomes]
rs67727505	0.97[EUR][1000 genomes]
rs67923759	0.92[EUR][1000 genomes]
rs6834685	0.81[EUR][1000 genomes]
rs6835683	0.93[CEU][hapmap]
rs6841198	0.93[CEU][hapmap]
rs6856291	0.86[CEU][hapmap]
rs71603034	0.84[EUR][1000 genomes]
rs7436583	0.93[CEU][hapmap]
rs7440570	0.93[CEU][hapmap]
rs7675602	0.93[CEU][hapmap]
rs9985632	0.93[CEU][hapmap]
rs9994676	0.87[CEU][hapmap]
rs9999570	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110328800-110353600	Weak transcription	Brain Germinal Matrix	brain
2	chr4:110329800-110334400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:110330200-110334000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:110330400-110339600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:110330800-110335800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:110332000-110334400	Enhancers	HSMMtube	muscle
7	chr4:110332200-110335400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:110332400-110335600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:110332400-110340400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:110332600-110335200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:110332800-110334200	Enhancers	Fetal Heart	heart
12	chr4:110332800-110336000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr4:110333200-110334400	Enhancers	Adipose Nuclei	Adipose
14	chr4:110333200-110352800	Weak transcription	Fetal Intestine Small	intestine
15	chr4:110333400-110334200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr4:110333400-110334200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:110333400-110334400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:110333400-110345400	Weak transcription	Fetal Stomach	stomach
19	chr4:110333600-110334400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:110333600-110334600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:110333800-110334200	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:110333800-110334600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr4:110333800-110334800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr4:110333800-110335000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:110333800-110353400	Weak transcription	HSMM	muscle

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