Variant report

Variant	rs35699695
Chromosome Location	chr4:110370340-110370341
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110353843..110356586-chr4:110367981..110370945,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138802	Chromatin interaction
ENSG00000247950	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10016533	0.97[EUR][1000 genomes]
rs10025781	0.93[EUR][1000 genomes]
rs10452150	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13110999	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13122093	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13132816	0.93[EUR][1000 genomes]
rs13133491	0.93[EUR][1000 genomes]
rs13140373	0.93[EUR][1000 genomes]
rs13151464	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13151516	0.93[EUR][1000 genomes]
rs15821	0.93[EUR][1000 genomes]
rs33911248	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34132975	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34133579	0.93[EUR][1000 genomes]
rs34320670	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34368920	0.82[EUR][1000 genomes]
rs34473874	0.85[EUR][1000 genomes]
rs34502105	0.93[EUR][1000 genomes]
rs34660885	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34710885	0.93[EUR][1000 genomes]
rs34727629	0.93[EUR][1000 genomes]
rs34813537	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34851707	0.93[EUR][1000 genomes]
rs34861128	0.90[EUR][1000 genomes]
rs34953524	0.93[EUR][1000 genomes]
rs35199349	0.93[EUR][1000 genomes]
rs35273490	0.81[EUR][1000 genomes]
rs35313553	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35329136	0.93[EUR][1000 genomes]
rs35450490	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35598950	0.93[EUR][1000 genomes]
rs35829490	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35865655	0.84[EUR][1000 genomes]
rs35866656	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35950484	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36102563	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41277037	0.93[EUR][1000 genomes]
rs6533427	0.81[EUR][1000 genomes]
rs6533434	0.82[EUR][1000 genomes]
rs66493839	0.93[EUR][1000 genomes]
rs67066117	0.89[EUR][1000 genomes]
rs67727505	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67923759	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6828719	0.84[EUR][1000 genomes]
rs6834685	0.82[EUR][1000 genomes]
rs71603034	0.92[EUR][1000 genomes]
rs71603035	0.84[EUR][1000 genomes]
rs72672698	0.84[EUR][1000 genomes]
rs7694710	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	esv1836921	chr4:110354632-110370867	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv1839822	chr4:110354632-110370867	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110357800-110370600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr4:110358000-110370600	Weak transcription	Fetal Brain Female	brain
3	chr4:110358000-110372000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:110358000-110384000	Weak transcription	Fetal Brain Male	brain
5	chr4:110358000-110384200	Weak transcription	Colonic Mucosa	Colon
6	chr4:110358600-110378600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:110360400-110384200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr4:110363000-110384200	Weak transcription	Esophagus	oesophagus
9	chr4:110363200-110370600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:110363600-110370600	Weak transcription	Spleen	Spleen
11	chr4:110363600-110371000	Weak transcription	Stomach Mucosa	stomach
12	chr4:110363600-110372000	Weak transcription	K562	blood
13	chr4:110363600-110383600	Weak transcription	Pancreas	Pancrea
14	chr4:110363600-110383600	Weak transcription	NHDF-Ad	bronchial
15	chr4:110363600-110384200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:110363600-110384200	Weak transcription	Hela-S3	cervix
17	chr4:110363600-110398400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr4:110363800-110370800	Weak transcription	HSMMtube	muscle
19	chr4:110364600-110370800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr4:110364600-110384200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr4:110365000-110372000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr4:110365000-110383400	Weak transcription	Fetal Heart	heart
23	chr4:110365000-110384000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr4:110365200-110370400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr4:110365200-110371000	Weak transcription	NH-A	brain
26	chr4:110365200-110384200	Weak transcription	Aorta	Aorta
27	chr4:110365400-110370600	Weak transcription	Lung	lung
28	chr4:110365800-110370800	Weak transcription	Brain Anterior Caudate	brain
29	chr4:110366000-110391400	Weak transcription	Small Intestine	intestine
30	chr4:110367200-110373600	Strong transcription	NHEK	skin
31	chr4:110367200-110373800	Strong transcription	HSMM	muscle
32	chr4:110367400-110383600	Weak transcription	HUVEC	blood vessel
33	chr4:110367600-110370400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:110367600-110370400	Weak transcription	Fetal Intestine Small	intestine
35	chr4:110367600-110370400	Weak transcription	Fetal Muscle Leg	muscle
36	chr4:110367600-110370600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr4:110367600-110370600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr4:110367600-110370600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr4:110367600-110370600	Weak transcription	Ovary	ovary
40	chr4:110367600-110370800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr4:110367600-110372000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr4:110367600-110372400	Weak transcription	Psoas Muscle	Psoas
43	chr4:110367600-110373400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr4:110367600-110374200	Weak transcription	Gastric	stomach
45	chr4:110367600-110375000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr4:110367600-110375600	Weak transcription	Brain Substantia Nigra	brain
47	chr4:110367600-110376800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr4:110367600-110383200	Weak transcription	Right Ventricle	heart
49	chr4:110367600-110383800	Weak transcription	NHLF	lung
50	chr4:110367600-110384000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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