Variant report

Variant	rs67727505
Chromosome Location	chr4:110337281-110337282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr4:110336893-110337399	HepG2	liver:	n/a	chr4:110337047-110337058
2	CEBPB	chr4:110337011-110337338	H1-hESC	embryonic stem cell:	n/a	chr4:110337047-110337058

Variant related genes	Relation type
SEC24B-AS1	TF binding region

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10016533	0.92[EUR][1000 genomes]
rs10025781	0.95[EUR][1000 genomes]
rs10452150	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13110999	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13122093	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13132816	0.89[EUR][1000 genomes]
rs13133491	0.89[EUR][1000 genomes]
rs13140373	0.89[EUR][1000 genomes]
rs13141018	0.81[AMR][1000 genomes]
rs13147221	0.81[AMR][1000 genomes]
rs13151464	0.95[EUR][1000 genomes]
rs13151516	0.89[EUR][1000 genomes]
rs15821	0.89[EUR][1000 genomes]
rs33911248	0.95[EUR][1000 genomes]
rs34132975	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34133579	0.89[EUR][1000 genomes]
rs34286241	0.86[AMR][1000 genomes]
rs34320670	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34368920	0.80[EUR][1000 genomes]
rs34473874	0.80[EUR][1000 genomes]
rs34502105	0.89[EUR][1000 genomes]
rs34660885	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34710885	0.89[EUR][1000 genomes]
rs34727629	0.89[EUR][1000 genomes]
rs34813537	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34851707	0.89[EUR][1000 genomes]
rs34861128	0.85[EUR][1000 genomes]
rs34953524	0.89[EUR][1000 genomes]
rs35199349	0.89[EUR][1000 genomes]
rs35313553	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35329136	0.89[EUR][1000 genomes]
rs35450490	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35598950	0.89[EUR][1000 genomes]
rs35699695	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35829490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35865655	0.82[EUR][1000 genomes]
rs35866656	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35950484	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36102563	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41277037	0.89[EUR][1000 genomes]
rs6533427	0.86[EUR][1000 genomes]
rs6533434	0.80[EUR][1000 genomes]
rs66493839	0.89[EUR][1000 genomes]
rs67066117	0.85[EUR][1000 genomes]
rs67923759	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6828719	0.82[EUR][1000 genomes]
rs6834685	0.80[EUR][1000 genomes]
rs71603034	0.87[EUR][1000 genomes]
rs71603035	0.82[EUR][1000 genomes]
rs72672698	0.82[EUR][1000 genomes]
rs7694710	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110328800-110353600	Weak transcription	Brain Germinal Matrix	brain
2	chr4:110330400-110339600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:110332400-110340400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:110333200-110352800	Weak transcription	Fetal Intestine Small	intestine
5	chr4:110333400-110345400	Weak transcription	Fetal Stomach	stomach
6	chr4:110333800-110353400	Weak transcription	HSMM	muscle
7	chr4:110334400-110351600	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:110334800-110340200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:110335200-110338600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:110335800-110337400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:110336000-110339800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:110336200-110340200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:110336600-110340200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr4:110336600-110340400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr4:110336800-110340200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:110337000-110337400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr4:110337200-110337400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr4:110337200-110337600	Enhancers	H9 Cell Line	embryonic stem cell
19	chr4:110337200-110337800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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