Variant report

Variant	rs10452150
Chromosome Location	chr4:110358861-110358862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:110354930..110357629-chr4:110358117..110363177,4	K562	blood:
2	chr4:110358792..110361560-chr4:110363855..110365822,2	K562	blood:
3	chr4:110354726..110357956-chr4:110358285..110360702,4	MCF-7	breast:
4	chr4:110358554..110360158-chr4:110363146..110366094,2	MCF-7	breast:
5	chr4:110356991..110360455-chr4:110735478..110738765,3	K562	blood:

Variant related genes	Relation type
ENSG00000138802	Chromatin interaction
ENSG00000247950	Chromatin interaction
ENSG00000109534	Chromatin interaction
ENSG00000272795	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10016533	0.97[EUR][1000 genomes]
rs10025781	0.93[EUR][1000 genomes]
rs13110999	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13122093	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13132816	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13133491	0.93[EUR][1000 genomes]
rs13140373	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13151464	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13151516	0.93[EUR][1000 genomes]
rs15821	0.93[EUR][1000 genomes]
rs33911248	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34132975	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34133579	0.93[EUR][1000 genomes]
rs34320670	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34368920	0.82[EUR][1000 genomes]
rs34473874	0.85[EUR][1000 genomes]
rs34502105	0.93[EUR][1000 genomes]
rs34660885	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34710885	0.93[EUR][1000 genomes]
rs34727629	0.93[EUR][1000 genomes]
rs34813537	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34851707	0.93[EUR][1000 genomes]
rs34861128	0.90[EUR][1000 genomes]
rs34953524	0.93[EUR][1000 genomes]
rs35199349	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35273490	0.81[EUR][1000 genomes]
rs35313553	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35329136	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35450490	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35598950	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35699695	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35829490	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35865655	0.84[EUR][1000 genomes]
rs35866656	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35950484	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36102563	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41277037	0.93[EUR][1000 genomes]
rs6533427	0.81[EUR][1000 genomes]
rs6533434	0.82[EUR][1000 genomes]
rs66493839	0.93[EUR][1000 genomes]
rs67066117	0.89[EUR][1000 genomes]
rs67727505	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67923759	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6828719	0.84[EUR][1000 genomes]
rs6834685	0.82[EUR][1000 genomes]
rs71603034	0.92[EUR][1000 genomes]
rs71603035	0.84[EUR][1000 genomes]
rs72672698	0.84[EUR][1000 genomes]
rs7665738	1.00[ASN][1000 genomes]
rs7694710	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	esv1836921	chr4:110354632-110370867	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv1839822	chr4:110354632-110370867	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110356200-110360000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr4:110356400-110360600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:110356400-110361400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr4:110356400-110366200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr4:110356600-110360600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr4:110356600-110360800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr4:110356600-110364400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr4:110356800-110359000	Enhancers	Pancreas	Pancrea
9	chr4:110356800-110366000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:110357000-110359000	Enhancers	Lung	lung
11	chr4:110357000-110360600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr4:110357000-110360800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr4:110357000-110361600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:110357000-110362200	Weak transcription	Aorta	Aorta
15	chr4:110357200-110359800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr4:110357200-110360200	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr4:110357200-110360800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr4:110357200-110362000	Weak transcription	HSMMtube	muscle
19	chr4:110357200-110362200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr4:110357200-110363000	Weak transcription	A549	lung
21	chr4:110357200-110363000	Weak transcription	NH-A	brain
22	chr4:110357200-110366000	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr4:110357400-110359000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:110357400-110359800	Weak transcription	Primary B cells from cord blood	blood
25	chr4:110357400-110359800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr4:110357400-110360000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:110357400-110360000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:110357400-110360200	Enhancers	Fetal Thymus	thymus
29	chr4:110357400-110360200	Enhancers	Thymus	Thymus
30	chr4:110357400-110361200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr4:110357400-110361600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr4:110357400-110361800	Weak transcription	HSMM	muscle
33	chr4:110357400-110362000	Weak transcription	Brain Substantia Nigra	brain
34	chr4:110357400-110362200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr4:110357400-110362200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr4:110357400-110362200	Weak transcription	Gastric	stomach
37	chr4:110357400-110362600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr4:110357400-110362800	Weak transcription	NHLF	lung
39	chr4:110357400-110363200	Weak transcription	NHDF-Ad	bronchial
40	chr4:110357400-110364400	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr4:110357400-110365200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr4:110357400-110365800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr4:110357400-110366200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:110357400-110367200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr4:110357600-110359200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr4:110357600-110360000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr4:110357600-110361600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr4:110357600-110362000	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr4:110357600-110362000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr4:110357600-110364600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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