Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10016533	0.81[EUR][1000 genomes]
rs10025781	0.84[EUR][1000 genomes]
rs10452150	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13110999	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13122093	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13141018	0.81[AMR][1000 genomes]
rs13147221	0.81[AMR][1000 genomes]
rs13151464	0.84[EUR][1000 genomes]
rs33911248	0.84[EUR][1000 genomes]
rs34132975	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34286241	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34320670	0.90[AMR][1000 genomes]
rs34660885	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34813537	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35313553	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35450490	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35699695	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35866656	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35950484	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36102563	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6533427	0.97[EUR][1000 genomes]
rs67727505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67923759	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7694710	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1799708	chr4:110309234-110333106	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110310800-110318800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:110311200-110327800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:110311600-110331400	Weak transcription	HSMMtube	muscle
4	chr4:110316400-110317200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:110316800-110317200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:110316800-110317200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:110317000-110317200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:110317000-110317200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:110317000-110317200	Enhancers	Right Atrium	heart
10	chr4:110317000-110317400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr4:110317000-110317400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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