Variant report

Variant	rs35950484
Chromosome Location	chr4:110394942-110394943
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110387620..110389236-chr4:110394728..110397410,2	K562	blood:
2	chr4:110384184..110389120-chr4:110389509..110396492,10	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10016533	0.97[EUR][1000 genomes]
rs10025781	0.93[EUR][1000 genomes]
rs10452150	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13110999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13122093	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13132816	0.93[EUR][1000 genomes]
rs13133491	0.93[EUR][1000 genomes]
rs13140373	0.93[EUR][1000 genomes]
rs13151464	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13151516	0.93[EUR][1000 genomes]
rs15821	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs33911248	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34132975	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34133579	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34320670	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34368920	0.82[EUR][1000 genomes]
rs34473874	0.85[EUR][1000 genomes]
rs34502105	0.93[EUR][1000 genomes]
rs34660885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34710885	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34727629	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34813537	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34851707	0.93[EUR][1000 genomes]
rs34861128	0.90[EUR][1000 genomes]
rs34953524	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35199349	0.93[EUR][1000 genomes]
rs35273490	0.81[EUR][1000 genomes]
rs35313553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35329136	0.93[EUR][1000 genomes]
rs35450490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35598950	0.93[EUR][1000 genomes]
rs35699695	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35829490	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35865655	0.84[EUR][1000 genomes]
rs35866656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36102563	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41277037	0.93[EUR][1000 genomes]
rs6533427	0.81[EUR][1000 genomes]
rs6533434	0.82[EUR][1000 genomes]
rs66493839	0.93[EUR][1000 genomes]
rs67066117	0.89[EUR][1000 genomes]
rs67727505	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67923759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6828719	0.84[EUR][1000 genomes]
rs6834685	0.82[EUR][1000 genomes]
rs71603034	0.92[EUR][1000 genomes]
rs71603035	0.84[EUR][1000 genomes]
rs72672698	0.84[EUR][1000 genomes]
rs7694710	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110363600-110398400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:110378800-110415800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:110383400-110396000	Strong transcription	Fetal Thymus	thymus
4	chr4:110383400-110397600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr4:110384800-110399800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:110384800-110401000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:110385400-110402800	Weak transcription	Brain Germinal Matrix	brain
8	chr4:110385400-110403000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:110385600-110415800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:110385600-110415800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr4:110385600-110415800	Weak transcription	Esophagus	oesophagus
12	chr4:110385800-110398200	Weak transcription	Fetal Intestine Small	intestine
13	chr4:110385800-110415600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:110385800-110415800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:110385800-110415800	Weak transcription	Colonic Mucosa	Colon
16	chr4:110386000-110395200	Weak transcription	Fetal Kidney	kidney
17	chr4:110386000-110415800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr4:110386200-110415800	Weak transcription	Lung	lung
19	chr4:110386200-110415800	Weak transcription	Spleen	Spleen
20	chr4:110386400-110398400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr4:110386400-110413600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr4:110386400-110415600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr4:110386400-110415800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr4:110386600-110396000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:110386600-110402400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr4:110386600-110415600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr4:110386800-110398000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr4:110386800-110402400	Weak transcription	Fetal Lung	lung
29	chr4:110386800-110405200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr4:110386800-110415600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr4:110387000-110402200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr4:110387000-110402200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr4:110387000-110402800	Weak transcription	Brain Angular Gyrus	brain
34	chr4:110387000-110415600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr4:110387000-110415800	Weak transcription	Fetal Brain Male	brain
36	chr4:110387000-110415800	Weak transcription	Fetal Brain Female	brain
37	chr4:110387000-110416400	Weak transcription	Right Ventricle	heart
38	chr4:110387200-110415600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr4:110387600-110415600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr4:110388000-110403600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:110389200-110396600	Strong transcription	Dnd41	blood
42	chr4:110389200-110398000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr4:110389400-110398800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr4:110389400-110402200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr4:110389800-110396200	Strong transcription	Liver	Liver
46	chr4:110390000-110415400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr4:110391000-110395400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr4:110391600-110402000	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr4:110391800-110415400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr4:110391800-110415600	Weak transcription	Ovary	ovary

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