Variant report

Variant	rs34132975
Chromosome Location	chr4:110378352-110378353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110377229..110379523-chr4:110388422..110390355,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10016533	0.97[EUR][1000 genomes]
rs10025781	0.93[EUR][1000 genomes]
rs10452150	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13110999	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13122093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13132816	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13133491	0.93[EUR][1000 genomes]
rs13140373	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13151464	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13151516	0.93[EUR][1000 genomes]
rs15821	0.93[EUR][1000 genomes]
rs33911248	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34133579	0.93[EUR][1000 genomes]
rs34320670	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34368920	0.82[EUR][1000 genomes]
rs34473874	0.85[EUR][1000 genomes]
rs34502105	0.93[EUR][1000 genomes]
rs34660885	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34710885	0.93[EUR][1000 genomes]
rs34727629	0.93[EUR][1000 genomes]
rs34813537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34851707	0.93[EUR][1000 genomes]
rs34861128	0.90[EUR][1000 genomes]
rs34953524	0.93[EUR][1000 genomes]
rs35199349	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35273490	0.81[EUR][1000 genomes]
rs35313553	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35329136	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35450490	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35598950	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35699695	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35829490	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35865655	0.84[EUR][1000 genomes]
rs35866656	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35950484	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36102563	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41277037	0.93[EUR][1000 genomes]
rs6533427	0.81[EUR][1000 genomes]
rs6533434	0.82[EUR][1000 genomes]
rs66493839	0.93[EUR][1000 genomes]
rs67066117	0.89[EUR][1000 genomes]
rs67727505	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67923759	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6828719	0.84[EUR][1000 genomes]
rs6834685	0.82[EUR][1000 genomes]
rs71603034	0.92[EUR][1000 genomes]
rs71603035	0.84[EUR][1000 genomes]
rs72672698	0.84[EUR][1000 genomes]
rs7694710	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110358000-110384000	Weak transcription	Fetal Brain Male	brain
2	chr4:110358000-110384200	Weak transcription	Colonic Mucosa	Colon
3	chr4:110358600-110378600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:110360400-110384200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:110363000-110384200	Weak transcription	Esophagus	oesophagus
6	chr4:110363600-110383600	Weak transcription	Pancreas	Pancrea
7	chr4:110363600-110383600	Weak transcription	NHDF-Ad	bronchial
8	chr4:110363600-110384200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:110363600-110384200	Weak transcription	Hela-S3	cervix
10	chr4:110363600-110398400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:110364600-110384200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:110365000-110383400	Weak transcription	Fetal Heart	heart
13	chr4:110365000-110384000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:110365200-110384200	Weak transcription	Aorta	Aorta
15	chr4:110366000-110391400	Weak transcription	Small Intestine	intestine
16	chr4:110367400-110383600	Weak transcription	HUVEC	blood vessel
17	chr4:110367600-110383200	Weak transcription	Right Ventricle	heart
18	chr4:110367600-110383800	Weak transcription	NHLF	lung
19	chr4:110367600-110384000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:110367600-110384200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr4:110367600-110384200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:110367600-110384200	Weak transcription	Brain Germinal Matrix	brain
23	chr4:110367800-110380800	Weak transcription	Brain Angular Gyrus	brain
24	chr4:110367800-110383800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr4:110367800-110383800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr4:110367800-110384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr4:110367800-110384200	Weak transcription	Fetal Kidney	kidney
28	chr4:110367800-110384200	Weak transcription	Osteobl	bone
29	chr4:110368000-110383400	Weak transcription	HMEC	breast
30	chr4:110368000-110383600	Weak transcription	HepG2	liver
31	chr4:110368000-110384200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr4:110368600-110383600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr4:110369000-110384200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr4:110369200-110384200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr4:110371200-110382200	Weak transcription	Brain Hippocampus Middle	brain
36	chr4:110371400-110378600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr4:110371400-110381400	Weak transcription	Brain Anterior Caudate	brain
38	chr4:110371400-110382800	Weak transcription	NH-A	brain
39	chr4:110371400-110383000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr4:110371400-110383200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr4:110371400-110383200	Weak transcription	Spleen	Spleen
42	chr4:110371400-110384000	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr4:110371400-110384000	Weak transcription	Fetal Brain Female	brain
44	chr4:110371400-110384200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr4:110371400-110384200	Weak transcription	Lung	lung
46	chr4:110371400-110384200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr4:110371400-110393200	Weak transcription	Stomach Mucosa	stomach
48	chr4:110371600-110383000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr4:110371600-110383800	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr4:110371600-110393400	Weak transcription	HSMMtube	muscle

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