Variant report

Variant	rs35041950
Chromosome Location	chr9:98183384-98183385
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:98181672..98184453-chr9:98323294..98326169,2	K562	blood:
2	chr9:98182926..98184668-chr9:98252213..98254652,2	K562	blood:
3	chr9:98079253..98081177-chr9:98182351..98184720,2	K562	blood:
4	chr9:98078504..98081485-chr9:98182409..98185219,2	MCF-7	breast:
5	chr9:98169625..98172393-chr9:98180968..98184245,3	MCF-7	breast:
6	chr9:98079253..98082500-chr9:98182351..98185745,3	K562	blood:
7	chr9:98181211..98184029-chr9:98185574..98187126,2	K562	blood:
8	chr9:98172552..98175777-chr9:98180826..98183716,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000271384	Chromatin interaction
ENSG00000158169	Chromatin interaction
ENSG00000213761	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10821464	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10993529	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10993534	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12004780	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2036514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2404693	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28471674	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28679639	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35402806	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35431736	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs357521	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs357522	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs357552	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59710018	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62558314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6479605	0.94[AMR][1000 genomes]
rs7388704	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7868504	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs905615	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs913711	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9695482	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv831658	chr9:98152971-98342178	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1051731	chr9:98154815-98201115	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98160400-98188400	Weak transcription	Pancreas	Pancrea
2	chr9:98169800-98183600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr9:98169800-98183800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr9:98172800-98183600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:98173000-98183600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:98173200-98183400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:98173200-98184000	Weak transcription	Fetal Intestine Large	intestine
8	chr9:98173400-98184000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:98173600-98188200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:98173800-98184000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:98174000-98183800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:98174200-98183400	Weak transcription	Fetal Intestine Small	intestine
13	chr9:98174200-98183800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:98175200-98183800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:98175200-98184200	Weak transcription	K562	blood
16	chr9:98176400-98184800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr9:98176600-98185200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr9:98177800-98184200	Weak transcription	HepG2	liver
19	chr9:98178000-98183800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:98178000-98185200	Weak transcription	NHLF	lung
21	chr9:98179400-98183800	Weak transcription	Lung	lung
22	chr9:98179600-98183800	Weak transcription	Liver	Liver
23	chr9:98179600-98183800	Weak transcription	A549	lung
24	chr9:98179800-98184000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr9:98181600-98184000	Weak transcription	NHEK	skin
26	chr9:98182000-98188400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr9:98182200-98184000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr9:98182200-98184000	Weak transcription	Fetal Lung	lung
29	chr9:98182800-98185400	Weak transcription	Right Ventricle	heart
30	chr9:98182800-98186000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr9:98183000-98184200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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