Variant report

Variant	rs905615
Chromosome Location	chr9:98146644-98146645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98144253..98146737-chr9:98186789..98189355,2	MCF-7	breast:
2	chr9:98144872..98147433-chr9:98200358..98201911,2	K562	blood:
3	chr9:98140920..98143126-chr9:98145300..98148121,2	K562	blood:
4	chr9:98146030..98146678-chr9:98247936..98248929,2	MCF-7	breast:
5	chr9:98143874..98147656-chr9:98271045..98275159,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237857	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10821464	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10993529	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10993534	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12004780	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2036514	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2404693	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28471674	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28679639	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35041950	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35402806	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35431736	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs357521	0.88[AMR][1000 genomes]
rs357522	0.86[AMR][1000 genomes]
rs357552	0.86[AMR][1000 genomes]
rs59710018	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62558314	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6479605	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7388704	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7868504	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs913711	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9695482	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1045479	chr9:98115290-98172995	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98139400-98147600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:98143000-98146800	Enhancers	NHLF	lung
3	chr9:98143200-98146800	Enhancers	HMEC	breast
4	chr9:98143200-98146800	Enhancers	NH-A	brain
5	chr9:98143400-98146800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:98143600-98146800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:98144000-98172400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:98144400-98146800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:98144600-98148400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:98144800-98147600	Enhancers	Placenta	Placenta
11	chr9:98145400-98146800	Flanking Active TSS	A549	lung
12	chr9:98145600-98149200	Weak transcription	Fetal Stomach	stomach
13	chr9:98146400-98147000	Enhancers	NHEK	skin
14	chr9:98146400-98147600	Weak transcription	HSMMtube	muscle
15	chr9:98146600-98146800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:98146600-98147000	Enhancers	Hela-S3	cervix
17	chr9:98146600-98147600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:98146600-98168400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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