Variant report

Variant	rs913711
Chromosome Location	chr9:98161627-98161628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98159703..98162217-chr9:98173787..98176524,2	K562	blood:

Variant related genes	Relation type
ENSG00000213761	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10821464	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993529	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10993534	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12004780	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2036514	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2404693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28471674	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28679639	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35041950	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35402806	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35431736	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs357521	0.80[JPT][hapmap];0.84[MEX][hapmap];0.87[MKK][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes]
rs357522	0.80[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes]
rs357552	0.90[JPT][hapmap];0.88[MEX][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59710018	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62558314	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6479605	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7388704	0.87[ASW][hapmap];0.94[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.95[MKK][hapmap];0.86[TSI][hapmap];0.80[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7868504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs905615	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9695482	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1045479	chr9:98115290-98172995	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831658	chr9:98152971-98342178	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1051731	chr9:98154815-98201115	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98144000-98172400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:98146600-98168400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:98150600-98173600	Weak transcription	Fetal Intestine Small	intestine
4	chr9:98160400-98188400	Weak transcription	Pancreas	Pancrea
5	chr9:98161200-98162200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr9:98161400-98162000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr9:98161400-98162000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr9:98161400-98162000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr9:98161400-98162000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:98161400-98162000	Enhancers	Adipose Nuclei	Adipose
11	chr9:98161400-98162000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr9:98161400-98162000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr9:98161400-98162200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:98161400-98162200	Enhancers	Fetal Muscle Leg	muscle
15	chr9:98161600-98161800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr9:98161600-98162000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:98161600-98162000	Enhancers	Fetal Muscle Trunk	muscle
18	chr9:98161600-98162200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr9:98161600-98162200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr9:98161600-98162200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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