Variant report

Variant	rs357552
Chromosome Location	chr9:98186326-98186327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98184189..98187188-chr9:98271024..98273730,2	K562	blood:
2	chr9:98186276..98191956-chr9:98269234..98276633,9	K562	blood:
3	chr9:98185536..98188227-chr9:98188428..98190298,2	MCF-7	breast:
4	chr9:98181211..98184029-chr9:98185574..98187126,2	K562	blood:
5	chr9:98184923..98187907-chr9:98195296..98197240,2	K562	blood:

Variant related genes	Relation type
ENSG00000185920	Chromatin interaction
ENSG00000237857	Chromatin interaction
ENSG00000271659	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10821464	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10993529	0.84[AMR][1000 genomes]
rs10993534	0.82[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes]
rs12004780	0.95[JPT][hapmap];0.85[AMR][1000 genomes]
rs2036514	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2404693	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28471674	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28679639	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35041950	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35402806	0.88[AMR][1000 genomes]
rs35431736	0.84[AMR][1000 genomes]
rs357521	0.88[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs357522	0.88[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59710018	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62558314	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6479605	0.84[AMR][1000 genomes]
rs7388704	0.81[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.81[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7868504	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs905615	0.86[AMR][1000 genomes]
rs913711	0.90[JPT][hapmap];0.88[MEX][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9695482	0.87[MEX][hapmap];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv831658	chr9:98152971-98342178	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1051731	chr9:98154815-98201115	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98160400-98188400	Weak transcription	Pancreas	Pancrea
2	chr9:98173600-98188200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:98182000-98188400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:98183800-98187200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:98184600-98187800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr9:98185000-98186400	ZNF genes & repeats	NHEK	skin
7	chr9:98185600-98186400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:98185600-98188200	Weak transcription	Fetal Brain Male	brain
9	chr9:98185600-98188400	Weak transcription	NHLF	lung
10	chr9:98185800-98186800	Weak transcription	A549	lung
11	chr9:98185800-98188000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:98185800-98188000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:98185800-98188000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr9:98185800-98188000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:98185800-98188000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr9:98185800-98188000	Weak transcription	Fetal Lung	lung
17	chr9:98185800-98188000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr9:98185800-98188000	Weak transcription	HepG2	liver
19	chr9:98185800-98188000	Weak transcription	HMEC	breast
20	chr9:98185800-98188000	Weak transcription	K562	blood
21	chr9:98185800-98188200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr9:98185800-98188200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr9:98185800-98188200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr9:98185800-98188200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr9:98185800-98188400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr9:98185800-98188400	Weak transcription	Right Ventricle	heart
27	chr9:98186000-98186600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr9:98186000-98188200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:98186000-98188200	Weak transcription	Liver	Liver

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