Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:98140920..98143126-chr9:98145300..98148121,2	K562	blood:
2	chr9:98139755..98142120-chr9:98143949..98145821,2	MCF-7	breast:
3	chr9:98137065..98138734-chr9:98139017..98141673,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10821464	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10993529	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10993534	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12004780	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2036514	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2404693	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28471674	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28679639	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35041950	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35402806	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs357521	0.86[AMR][1000 genomes]
rs357522	0.84[AMR][1000 genomes]
rs357552	0.84[AMR][1000 genomes]
rs59710018	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62558314	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6479605	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7388704	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7868504	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs905615	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs913711	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9695482	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1045479	chr9:98115290-98172995	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv972426	chr9:98134160-98142321	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98136400-98143600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:98139400-98147600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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