Variant report

Variant	rs9695482
Chromosome Location	chr9:98144136-98144137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98143391..98145601-chr9:98149579..98151738,2	MCF-7	breast:
2	chr9:98134922..98136440-chr9:98143391..98144942,2	MCF-7	breast:
3	chr9:98139755..98142120-chr9:98143949..98145821,2	MCF-7	breast:
4	chr9:98143050..98145894-chr9:98187631..98190723,5	MCF-7	breast:
5	chr9:98143874..98147656-chr9:98271045..98275159,6	MCF-7	breast:
6	chr9:98077971..98080393-chr9:98142983..98145704,5	MCF-7	breast:
7	chr9:98134626..98137202-chr9:98143503..98145569,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158169	Chromatin interaction
ENSG00000237857	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10821464	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10993529	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10993534	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12004780	0.94[CEU][hapmap];0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2036514	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2404693	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28471674	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28679639	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35041950	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35402806	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35431736	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs357521	0.83[MEX][hapmap];0.86[AMR][1000 genomes]
rs357522	0.84[AMR][1000 genomes]
rs357552	0.87[MEX][hapmap];0.84[AMR][1000 genomes]
rs59710018	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62558314	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6479605	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7388704	0.88[CEU][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7868504	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs905615	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs913711	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1045479	chr9:98115290-98172995	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98139400-98147600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:98142400-98144800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:98143000-98146800	Enhancers	NHLF	lung
4	chr9:98143200-98144200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:98143200-98144200	Enhancers	K562	blood
6	chr9:98143200-98146600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:98143200-98146800	Enhancers	HMEC	breast
8	chr9:98143200-98146800	Enhancers	NH-A	brain
9	chr9:98143400-98146800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:98143600-98146000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:98143600-98146800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:98143800-98144600	Enhancers	A549	lung
13	chr9:98143800-98145400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:98144000-98144600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:98144000-98144600	Enhancers	Hela-S3	cervix
16	chr9:98144000-98145400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:98144000-98145400	Weak transcription	HSMM	muscle
18	chr9:98144000-98145400	Weak transcription	HSMMtube	muscle
19	chr9:98144000-98145600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:98144000-98145600	Weak transcription	Adipose Nuclei	Adipose
21	chr9:98144000-98172400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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