Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98136427..98138754-chr9:98187606..98189762,2	MCF-7	breast:
2	chr9:98134626..98137202-chr9:98143503..98145569,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237857	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10821464	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10993529	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10993534	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12004780	0.94[CEU][hapmap];0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2036514	0.94[AMR][1000 genomes]
rs2404693	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28471674	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28679639	0.90[AMR][1000 genomes]
rs35041950	0.94[AMR][1000 genomes]
rs35402806	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35431736	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs357521	0.86[AMR][1000 genomes]
rs357522	0.84[AMR][1000 genomes]
rs357552	0.84[AMR][1000 genomes]
rs59710018	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62558314	0.94[AMR][1000 genomes]
rs7388704	0.93[CEU][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7868504	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs905615	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs913711	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9695482	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1045479	chr9:98115290-98172995	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv972426	chr9:98134160-98142321	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98128000-98139200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:98135000-98136800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr9:98135800-98136800	Enhancers	Hela-S3	cervix
4	chr9:98136400-98143600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search: