Variant report
| Variant | rs35226168 |
|---|---|
| Chromosome Location | chr5:107981888-107981889 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:107981629..107983356-chr5:107983495..107985186,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11954718 | 0.82[AFR][1000 genomes] |
| rs11958366 | 1.00[AMR][1000 genomes] |
| rs2202807 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56816112 | 1.00[AMR][1000 genomes] |
| rs57038920 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57583757 | 1.00[AMR][1000 genomes] |
| rs57720374 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57768784 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58369775 | 1.00[AMR][1000 genomes] |
| rs58854725 | 1.00[AFR][1000 genomes] |
| rs59248454 | 1.00[AMR][1000 genomes] |
| rs60645247 | 1.00[AMR][1000 genomes] |
| rs61246893 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73203747 | 1.00[AMR][1000 genomes] |
| rs73203750 | 1.00[AMR][1000 genomes] |
| rs73203753 | 1.00[AMR][1000 genomes] |
| rs73203761 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73203763 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73203767 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73203768 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73203771 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73203779 | 0.82[AFR][1000 genomes] |
| rs73203785 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73207509 | 1.00[AMR][1000 genomes] |
| rs73207512 | 1.00[AMR][1000 genomes] |
| rs73207519 | 1.00[AMR][1000 genomes] |
| rs73207522 | 1.00[AMR][1000 genomes] |
| rs73207532 | 1.00[AMR][1000 genomes] |
| rs73207541 | 1.00[AMR][1000 genomes] |
| rs73219626 | 1.00[AMR][1000 genomes] |
| rs73220148 | 1.00[AMR][1000 genomes] |
| rs73220198 | 1.00[AMR][1000 genomes] |
| rs73222033 | 1.00[AMR][1000 genomes] |
| rs73222038 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882689 | chr5:107595383-108299744 | Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| 2 | nsv1019409 | chr5:107934028-107991426 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:107978200-107984600 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
| 2 | chr5:107979600-107984400 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 3 | chr5:107981800-107982400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
