Variant report
| Variant | rs73220148 |
|---|---|
| Chromosome Location | chr5:108025258-108025259 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:108023680..108026535-chr5:108082571..108085038,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151422 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs11958366 | 1.00[AMR][1000 genomes] |
| rs2202807 | 1.00[AMR][1000 genomes] |
| rs35226168 | 1.00[AMR][1000 genomes] |
| rs56816112 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57038920 | 1.00[AMR][1000 genomes] |
| rs57583757 | 1.00[AMR][1000 genomes] |
| rs57720374 | 1.00[AMR][1000 genomes] |
| rs57768784 | 1.00[AMR][1000 genomes] |
| rs58369775 | 1.00[AMR][1000 genomes] |
| rs59248454 | 1.00[AMR][1000 genomes] |
| rs60645247 | 1.00[AMR][1000 genomes] |
| rs61246893 | 1.00[AMR][1000 genomes] |
| rs73203747 | 1.00[AMR][1000 genomes] |
| rs73203750 | 1.00[AMR][1000 genomes] |
| rs73203753 | 1.00[AMR][1000 genomes] |
| rs73203761 | 1.00[AMR][1000 genomes] |
| rs73203763 | 1.00[AMR][1000 genomes] |
| rs73203767 | 1.00[AMR][1000 genomes] |
| rs73203768 | 1.00[AMR][1000 genomes] |
| rs73203771 | 1.00[AMR][1000 genomes] |
| rs73203785 | 1.00[AMR][1000 genomes] |
| rs73207509 | 1.00[AMR][1000 genomes] |
| rs73207512 | 1.00[AMR][1000 genomes] |
| rs73207519 | 1.00[AMR][1000 genomes] |
| rs73207522 | 1.00[AMR][1000 genomes] |
| rs73207532 | 1.00[AMR][1000 genomes] |
| rs73207541 | 1.00[AMR][1000 genomes] |
| rs73207542 | 1.00[AMR][1000 genomes] |
| rs73207544 | 1.00[AMR][1000 genomes] |
| rs73207557 | 1.00[AMR][1000 genomes] |
| rs73207559 | 1.00[AMR][1000 genomes] |
| rs73207560 | 1.00[AMR][1000 genomes] |
| rs73219626 | 1.00[AMR][1000 genomes] |
| rs73220198 | 1.00[AMR][1000 genomes] |
| rs73222033 | 1.00[AMR][1000 genomes] |
| rs73222038 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882689 | chr5:107595383-108299744 | Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024076 | chr5:107991426-108028223 | Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv980959 | chr5:108023194-108043010 | Enhancers Weak transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:108007000-108034800 | Weak transcription | Right Atrium | heart |
| 2 | chr5:108024400-108032600 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 3 | chr5:108024400-108033000 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 4 | chr5:108024600-108032600 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
