Variant report

Variant	rs73222038
Chromosome Location	chr5:108079806-108079807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CCNT2	chr5:108079782-108079938	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:108062534..108064053-chr5:108078834..108081029,2	MCF-7	breast:
2	chr5:108060235..108074407-chr5:108078172..108087811,48	K562	blood:
3	chr5:108079486..108081928-chr5:108082794..108085941,4	MCF-7	breast:
4	chr5:108067076..108069295-chr5:108079575..108082340,2	MCF-7	breast:
5	chr5:108059312..108068052-chr5:108079113..108087366,42	K562	blood:
6	chr5:108079558..108082306-chr5:108082849..108087375,5	K562	blood:

No data

Variant related genes	Relation type
FER	TF binding region
ENSG00000272523	Chromatin interaction
ENSG00000151422	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11958366	1.00[AMR][1000 genomes]
rs2202807	1.00[AMR][1000 genomes]
rs35226168	1.00[AMR][1000 genomes]
rs56816112	1.00[AMR][1000 genomes]
rs57038920	1.00[AMR][1000 genomes]
rs57583757	1.00[AMR][1000 genomes]
rs57720374	1.00[AMR][1000 genomes]
rs57768784	1.00[AMR][1000 genomes]
rs58369775	1.00[AMR][1000 genomes]
rs59248454	1.00[AMR][1000 genomes]
rs60645247	1.00[AMR][1000 genomes]
rs61246893	1.00[AMR][1000 genomes]
rs73203747	1.00[AMR][1000 genomes]
rs73203750	1.00[AMR][1000 genomes]
rs73203753	1.00[AMR][1000 genomes]
rs73203761	1.00[AMR][1000 genomes]
rs73203763	1.00[AMR][1000 genomes]
rs73203767	1.00[AMR][1000 genomes]
rs73203768	1.00[AMR][1000 genomes]
rs73203771	1.00[AMR][1000 genomes]
rs73203785	1.00[AMR][1000 genomes]
rs73207509	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73207512	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73207519	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73207522	1.00[AMR][1000 genomes]
rs73207532	1.00[AMR][1000 genomes]
rs73207541	1.00[AMR][1000 genomes]
rs73207542	1.00[AMR][1000 genomes]
rs73207544	1.00[AMR][1000 genomes]
rs73207557	1.00[AMR][1000 genomes]
rs73207559	1.00[AMR][1000 genomes]
rs73207560	1.00[AMR][1000 genomes]
rs73209319	1.00[AMR][1000 genomes]
rs73209335	1.00[AMR][1000 genomes]
rs73209339	1.00[AMR][1000 genomes]
rs73209350	1.00[AMR][1000 genomes]
rs73209355	1.00[AMR][1000 genomes]
rs73209360	1.00[AMR][1000 genomes]
rs73209361	1.00[AMR][1000 genomes]
rs73219626	1.00[AMR][1000 genomes]
rs73220148	1.00[AMR][1000 genomes]
rs73220198	1.00[AMR][1000 genomes]
rs73222033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73222036	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108066600-108082600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:108076600-108080000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:108078000-108080400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:108078800-108080200	Enhancers	HSMMtube	muscle
5	chr5:108078800-108080400	Enhancers	HSMM	muscle
6	chr5:108079000-108080000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:108079000-108080000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:108079200-108080000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:108079200-108080000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:108079200-108080000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr5:108079200-108080000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:108079400-108080000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr5:108079400-108082600	Weak transcription	Fetal Kidney	kidney
14	chr5:108079400-108083000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:108079600-108080000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:108079600-108080000	Enhancers	Osteobl	bone
17	chr5:108079600-108080200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:108079600-108080200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr5:108079800-108080000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr5:108079800-108080000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr5:108079800-108080000	Enhancers	Fetal Lung	lung
22	chr5:108079800-108080200	Enhancers	H1 Cell Line	embryonic stem cell
23	chr5:108079800-108080400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:108079800-108080600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:108079800-108082600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:108079800-108083000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links