Variant report

Variant	rs73207532
Chromosome Location	chr5:108146866-108146867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11958366	1.00[AMR][1000 genomes]
rs2202807	1.00[AMR][1000 genomes]
rs35226168	1.00[AMR][1000 genomes]
rs56816112	1.00[AMR][1000 genomes]
rs57038920	1.00[AMR][1000 genomes]
rs57583757	1.00[AMR][1000 genomes]
rs57720374	1.00[AMR][1000 genomes]
rs57768784	1.00[AMR][1000 genomes]
rs58369775	1.00[AMR][1000 genomes]
rs59248454	1.00[AMR][1000 genomes]
rs60645247	1.00[AMR][1000 genomes]
rs61246893	1.00[AMR][1000 genomes]
rs73203747	1.00[AMR][1000 genomes]
rs73203750	1.00[AMR][1000 genomes]
rs73203753	1.00[AMR][1000 genomes]
rs73203761	1.00[AMR][1000 genomes]
rs73203763	1.00[AMR][1000 genomes]
rs73203767	1.00[AMR][1000 genomes]
rs73203768	1.00[AMR][1000 genomes]
rs73203771	1.00[AMR][1000 genomes]
rs73203785	1.00[AMR][1000 genomes]
rs73207509	1.00[AMR][1000 genomes]
rs73207512	1.00[AMR][1000 genomes]
rs73207519	1.00[AMR][1000 genomes]
rs73207522	1.00[AMR][1000 genomes]
rs73207541	1.00[AMR][1000 genomes]
rs73207542	1.00[AMR][1000 genomes]
rs73207544	1.00[AMR][1000 genomes]
rs73207557	1.00[AMR][1000 genomes]
rs73207559	1.00[AMR][1000 genomes]
rs73207560	1.00[AMR][1000 genomes]
rs73209319	1.00[AMR][1000 genomes]
rs73209335	1.00[AMR][1000 genomes]
rs73209339	1.00[AMR][1000 genomes]
rs73209350	1.00[AMR][1000 genomes]
rs73209355	1.00[AMR][1000 genomes]
rs73209360	1.00[AMR][1000 genomes]
rs73209361	1.00[AMR][1000 genomes]
rs73209365	1.00[AMR][1000 genomes]
rs73211542	1.00[AMR][1000 genomes]
rs73220148	1.00[AMR][1000 genomes]
rs73220198	1.00[AMR][1000 genomes]
rs73222033	1.00[AMR][1000 genomes]
rs73222038	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv471039	chr5:108133967-108245089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108124800-108149400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr5:108137600-108153000	Weak transcription	Osteobl	bone
3	chr5:108137800-108149000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr5:108138000-108153200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:108140600-108147200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:108140800-108152800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:108142000-108147200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:108144400-108149000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:108145000-108147200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:108145400-108147000	ZNF genes & repeats	Fetal Lung	lung
11	chr5:108145400-108153000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr5:108146000-108147000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:108146000-108147000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:108146000-108147000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:108146000-108147000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:108146000-108147000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr5:108146000-108147000	ZNF genes & repeats	Fetal Intestine Small	intestine
18	chr5:108146000-108147000	ZNF genes & repeats	Fetal Stomach	stomach
19	chr5:108146000-108147000	ZNF genes & repeats	Lung	lung
20	chr5:108146000-108147800	ZNF genes & repeats	NHEK	skin
21	chr5:108146200-108147400	ZNF genes & repeats	HMEC	breast
22	chr5:108146400-108147000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:108146400-108147000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:108146400-108147000	ZNF genes & repeats	Aorta	Aorta
25	chr5:108146400-108147000	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
26	chr5:108146400-108147400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr5:108146600-108147000	ZNF genes & repeats	Left Ventricle	heart
28	chr5:108146600-108147000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
29	chr5:108146600-108156000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr5:108146800-108147000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr5:108146800-108147000	Enhancers	Gastric	stomach
32	chr5:108146800-108147000	Weak transcription	A549	lung
33	chr5:108146800-108147600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr5:108146800-108150000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr5:108146800-108183600	Weak transcription	Ovary	ovary

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