Variant report

Variant	rs57038920
Chromosome Location	chr5:108010449-108010450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11954718	1.00[AFR][1000 genomes]
rs11958366	1.00[AMR][1000 genomes]
rs11960315	0.91[AFR][1000 genomes]
rs2202807	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35226168	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56816112	1.00[AMR][1000 genomes]
rs57583757	1.00[AMR][1000 genomes]
rs57720374	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57768784	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58369775	1.00[AMR][1000 genomes]
rs58854725	0.82[AFR][1000 genomes]
rs59248454	1.00[AMR][1000 genomes]
rs60645247	1.00[AMR][1000 genomes]
rs61243773	0.83[AFR][1000 genomes]
rs61246893	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73203747	1.00[AMR][1000 genomes]
rs73203750	1.00[AMR][1000 genomes]
rs73203753	1.00[AMR][1000 genomes]
rs73203761	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73203763	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73203767	1.00[AMR][1000 genomes]
rs73203768	1.00[AMR][1000 genomes]
rs73203771	1.00[AMR][1000 genomes]
rs73203779	1.00[AFR][1000 genomes]
rs73203785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73207509	1.00[AMR][1000 genomes]
rs73207512	1.00[AMR][1000 genomes]
rs73207519	1.00[AMR][1000 genomes]
rs73207522	1.00[AMR][1000 genomes]
rs73207532	1.00[AMR][1000 genomes]
rs73207541	1.00[AMR][1000 genomes]
rs73207542	1.00[AMR][1000 genomes]
rs73207544	1.00[AMR][1000 genomes]
rs73219626	1.00[AMR][1000 genomes]
rs73220148	1.00[AMR][1000 genomes]
rs73220198	1.00[AMR][1000 genomes]
rs73222033	1.00[AMR][1000 genomes]
rs73222038	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1024076	chr5:107991426-108028223	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1034158	chr5:107995509-108018395	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv523619	chr5:107999505-108016782	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108007000-108034800	Weak transcription	Right Atrium	heart
2	chr5:108007600-108012000	Weak transcription	Aorta	Aorta
3	chr5:108008200-108010600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:108010400-108010800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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