Variant report

Variant	rs35391204
Chromosome Location	chr15:52032295-52032296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52029378..52032499-chr15:52121077..52123299,3	MCF-7	breast:
2	chr15:52029591..52032408-chr15:52042418..52044684,3	K562	blood:
3	chr15:52027363..52032665-chr15:52041435..52046045,23	MCF-7	breast:
4	chr15:51913765..51915437-chr15:52031923..52034915,2	MCF-7	breast:
5	chr15:52030420..52032691-chr15:52120807..52123246,2	MCF-7	breast:
6	chr15:52028355..52032748-chr15:52040539..52046492,10	K562	blood:

Variant related genes	Relation type
ENSG00000140280	Chromatin interaction
ENSG00000104093	Chromatin interaction
ENSG00000138594	Chromatin interaction
ENSG00000128872	Chromatin interaction
ENSG00000259377	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1001690	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10444824	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10444825	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11070865	0.99[EUR][1000 genomes]
rs11070866	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11070867	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11070868	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11070869	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11630579	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11630943	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11631858	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11636869	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11637876	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12050524	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12903500	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12904413	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12904900	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12905283	0.83[EUR][1000 genomes]
rs12912928	0.83[EUR][1000 genomes]
rs12913583	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17526463	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17610862	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17611193	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1840708	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1863430	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2010026	0.90[EUR][1000 genomes]
rs2034856	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2554314	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28699115	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3088312	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs34098740	0.84[ASN][1000 genomes]
rs34504520	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35270232	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35823585	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3794532	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3898905	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4365237	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55887408	0.87[AMR][1000 genomes]
rs56148956	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56185947	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6493520	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6493521	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6493525	0.82[EUR][1000 genomes]
rs6493526	0.82[EUR][1000 genomes]
rs7162176	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7164961	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7166962	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7168659	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7170091	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7170910	0.81[EUR][1000 genomes]
rs7171516	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7171796	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7174497	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7174808	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7175017	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7178166	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7178561	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7178776	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7178940	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7179599	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7181540	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs726158	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8024585	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8025069	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8026521	0.84[EUR][1000 genomes]
rs8028486	0.84[EUR][1000 genomes]
rs8028922	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8033433	0.82[EUR][1000 genomes]
rs8035126	0.81[EUR][1000 genomes]
rs8035173	0.89[EUR][1000 genomes]
rs8040975	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8040986	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9944235	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830011	chr15:52027777-52048710	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a
2	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52030600-52032600	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr15:52030600-52032800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:52030600-52043200	Weak transcription	Gastric	stomach
4	chr15:52030800-52032400	Enhancers	K562	blood
5	chr15:52030800-52032600	Enhancers	Primary T cells from cord blood	blood
6	chr15:52030800-52032800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr15:52031000-52032400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:52031000-52032600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr15:52031000-52033400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:52031200-52043000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:52031400-52032400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:52031600-52032400	Enhancers	Fetal Thymus	thymus
13	chr15:52031800-52032400	Enhancers	Thymus	Thymus
14	chr15:52032000-52032600	Enhancers	Primary T cells fromperipheralblood	blood

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