Variant report

Variant	rs12912928
Chromosome Location	chr15:52115295-52115296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52115087..52118041-chr15:52136607..52138939,2	MCF-7	breast:
2	chr15:52091331..52093041-chr15:52113410..52115469,2	MCF-7	breast:
3	chr15:52114106..52115784-chr15:52121370..52123260,2	K562	blood:

Variant related genes	Relation type
ENSG00000138594	Chromatin interaction

Extended variants
information (count: 226 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:225)

rs_ID	r²[population]
rs1025184	0.86[EUR][1000 genomes]
rs1035737	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1035739	0.82[EUR][1000 genomes]
rs10444824	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10444825	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10851503	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10851504	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11049	0.87[EUR][1000 genomes]
rs11070865	0.83[EUR][1000 genomes]
rs11070866	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11070867	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11070868	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11070869	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11630253	0.87[EUR][1000 genomes]
rs11630579	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11630943	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11631858	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11636869	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11637876	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11638677	0.86[EUR][1000 genomes]
rs12050524	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12591672	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12593708	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12901638	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12903500	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12904413	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12904900	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12905283	0.94[EUR][1000 genomes]
rs12908327	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12913583	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12913850	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12915015	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12915568	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17526463	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17526760	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17539905	0.87[EUR][1000 genomes]
rs17610862	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17611193	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17612102	0.83[EUR][1000 genomes]
rs17612123	0.84[EUR][1000 genomes]
rs1840708	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1863430	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2006773	0.94[EUR][1000 genomes]
rs2007335	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2007355	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2010026	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2011995	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2034856	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2052705	0.89[EUR][1000 genomes]
rs2052706	0.89[EUR][1000 genomes]
rs2052708	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2052709	0.89[EUR][1000 genomes]
rs2114191	0.87[EUR][1000 genomes]
rs2241503	0.82[EUR][1000 genomes]
rs2252606	0.87[EUR][1000 genomes]
rs2252831	0.94[EUR][1000 genomes]
rs2253116	0.88[EUR][1000 genomes]
rs2303443	0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2414122	0.86[EUR][1000 genomes]
rs2433217	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2433221	0.87[EUR][1000 genomes]
rs2433222	0.89[EUR][1000 genomes]
rs2436655	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2436656	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2436657	0.89[EUR][1000 genomes]
rs2436658	0.87[EUR][1000 genomes]
rs2436660	0.87[EUR][1000 genomes]
rs2436662	0.94[EUR][1000 genomes]
rs2441780	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2448946	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2448947	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2448948	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2448949	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2448950	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2448951	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2448953	0.86[EUR][1000 genomes]
rs2470600	0.90[EUR][1000 genomes]
rs2470601	0.88[EUR][1000 genomes]
rs2470602	0.87[EUR][1000 genomes]
rs2470603	0.82[EUR][1000 genomes]
rs2470605	0.80[EUR][1000 genomes]
rs2470607	0.81[EUR][1000 genomes]
rs2470608	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2470610	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2470611	0.87[EUR][1000 genomes]
rs2470612	0.86[EUR][1000 genomes]
rs2470616	0.86[EUR][1000 genomes]
rs2470618	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2554314	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2554322	0.88[EUR][1000 genomes]
rs2554327	0.94[EUR][1000 genomes]
rs2554328	0.94[EUR][1000 genomes]
rs2554342	0.88[EUR][1000 genomes]
rs2554349	0.89[EUR][1000 genomes]
rs2554350	0.89[EUR][1000 genomes]
rs2554353	0.94[EUR][1000 genomes]
rs2570238	0.95[EUR][1000 genomes]
rs2570239	0.95[EUR][1000 genomes]
rs2570240	0.91[EUR][1000 genomes]
rs2570241	0.91[EUR][1000 genomes]
rs2570248	0.94[EUR][1000 genomes]
rs2570263	0.88[EUR][1000 genomes]
rs2570268	0.88[EUR][1000 genomes]
rs2570269	0.87[EUR][1000 genomes]
rs2570271	0.87[EUR][1000 genomes]
rs2570275	0.87[EUR][1000 genomes]
rs2593168	0.89[EUR][1000 genomes]
rs2593170	0.89[EUR][1000 genomes]
rs2593173	0.89[EUR][1000 genomes]
rs2593177	0.87[EUR][1000 genomes]
rs2593179	0.89[EUR][1000 genomes]
rs2593182	0.89[EUR][1000 genomes]
rs2593183	0.89[EUR][1000 genomes]
rs2593185	0.87[EUR][1000 genomes]
rs2593187	0.87[EUR][1000 genomes]
rs2593188	0.87[EUR][1000 genomes]
rs2593198	0.87[EUR][1000 genomes]
rs2593199	0.87[EUR][1000 genomes]
rs2593202	0.87[EUR][1000 genomes]
rs2593204	0.82[EUR][1000 genomes]
rs2623243	0.87[EUR][1000 genomes]
rs2623244	0.87[EUR][1000 genomes]
rs2623255	0.86[EUR][1000 genomes]
rs2623266	0.89[EUR][1000 genomes]
rs2623271	0.94[EUR][1000 genomes]
rs2623279	0.89[EUR][1000 genomes]
rs2623281	0.89[EUR][1000 genomes]
rs2623282	0.89[EUR][1000 genomes]
rs2623283	0.89[EUR][1000 genomes]
rs2623284	0.89[EUR][1000 genomes]
rs2623285	0.89[EUR][1000 genomes]
rs2623286	0.89[EUR][1000 genomes]
rs2623288	0.88[EUR][1000 genomes]
rs2623289	0.88[EUR][1000 genomes]
rs28699115	0.83[EUR][1000 genomes]
rs2912186	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2912187	0.86[EUR][1000 genomes]
rs2912188	0.86[EUR][1000 genomes]
rs2912189	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2916169	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2916170	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2916171	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2916172	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2916175	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2916176	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2916177	0.87[EUR][1000 genomes]
rs2921951	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2921953	0.88[EUR][1000 genomes]
rs2929422	0.86[EUR][1000 genomes]
rs2929423	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2929424	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2929425	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2929426	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2929428	0.87[EUR][1000 genomes]
rs2959285	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2959289	0.88[EUR][1000 genomes]
rs2959291	0.86[EUR][1000 genomes]
rs2959292	0.86[EUR][1000 genomes]
rs2959293	0.86[EUR][1000 genomes]
rs2959298	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2959299	0.88[EUR][1000 genomes]
rs2959300	0.88[EUR][1000 genomes]
rs2959302	0.86[EUR][1000 genomes]
rs2959304	0.85[EUR][1000 genomes]
rs2959305	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2959306	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2959307	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3088312	0.81[EUR][1000 genomes]
rs34504520	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35270232	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35391204	0.83[EUR][1000 genomes]
rs35823585	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36087956	0.88[EUR][1000 genomes]
rs3794532	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3898905	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4365237	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55887408	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56148956	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56185947	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62015190	0.83[EUR][1000 genomes]
rs62016192	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6493520	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6493521	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6493525	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6493526	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67895020	0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7162176	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7162554	0.87[EUR][1000 genomes]
rs7162925	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7163541	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7164961	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7166962	0.82[EUR][1000 genomes]
rs7168659	0.82[EUR][1000 genomes]
rs7170091	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7170910	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7171516	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7171796	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7174497	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7174808	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7175017	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7178166	0.86[EUR][1000 genomes]
rs7178561	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7178776	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7178940	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7179599	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7181540	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7182917	0.88[ASN][1000 genomes]
rs726158	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72732914	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8024585	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8025069	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8026521	0.93[EUR][1000 genomes]
rs8027721	0.83[EUR][1000 genomes]
rs8028486	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8028922	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8029036	0.84[EUR][1000 genomes]
rs8033433	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8035126	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8038344	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8040975	0.86[EUR][1000 genomes]
rs8040986	0.83[EUR][1000 genomes]
rs8040991	0.94[EUR][1000 genomes]
rs8041866	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs990665	0.89[EUR][1000 genomes]
rs9944235	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52107200-52121400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:52111400-52117400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:52114000-52117400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:52114000-52117400	Weak transcription	Lung	lung
5	chr15:52114000-52121200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:52114000-52121400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:52114000-52121600	Weak transcription	Aorta	Aorta
8	chr15:52114200-52121600	Weak transcription	Psoas Muscle	Psoas

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