Variant report

Variant rs2470616
Chromosome Location chr15:52262477-52262478
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52244600-52262600 Weak transcription Fetal Heart heart
2 chr15:52245600-52262600 Weak transcription iPS-15b Cell Line embryonic stem cell
3 chr15:52245800-52263000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr15:52245800-52263200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr15:52249800-52263000 Weak transcription Psoas Muscle Psoas
6 chr15:52253200-52262800 Weak transcription HSMMtube muscle
7 chr15:52253200-52263000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr15:52253600-52263000 Weak transcription Right Ventricle heart
9 chr15:52253800-52262800 Weak transcription H9 Cell Line embryonic stem cell
10 chr15:52253800-52263200 Weak transcription Gastric stomach
11 chr15:52254200-52262600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr15:52254200-52262800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr15:52254200-52263200 Weak transcription Left Ventricle heart
14 chr15:52254400-52263000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr15:52254400-52263200 Weak transcription Ovary ovary
16 chr15:52254600-52262800 Weak transcription Rectal Smooth Muscle rectum
17 chr15:52257800-52263000 Weak transcription ES-WA7 Cell Line embryonic stem cell
18 chr15:52258200-52262600 Weak transcription NH-A brain
19 chr15:52258400-52262600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
20 chr15:52258600-52262600 Weak transcription HUES64 Cell Line embryonic stem cell
21 chr15:52258600-52262800 Weak transcription Fetal Kidney kidney
22 chr15:52260000-52262800 Weak transcription Primary B cells from cord blood blood
23 chr15:52260200-52262600 Weak transcription Adipose Nuclei Adipose
24 chr15:52260200-52262800 Weak transcription Monocytes-CD14+_RO01746 blood
25 chr15:52260800-52262800 Weak transcription Thymus Thymus
26 chr15:52261000-52263000 Weak transcription Fetal Intestine Small intestine
27 chr15:52261200-52263200 Enhancers Primary T cells fromperipheralblood blood
28 chr15:52261600-52262800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr15:52261600-52263200 Enhancers Primary Natural Killer cells fromperipheralblood blood
30 chr15:52261800-52262600 Enhancers Cortex derived primary cultured neurospheres brain
31 chr15:52261800-52262800 Enhancers Primary T helper cells fromperipheralblood blood
32 chr15:52261800-52262800 Enhancers Duodenum Mucosa Duodenum
33 chr15:52261800-52262800 Enhancers Skeletal Muscle Female skeletal muscle
34 chr15:52261800-52263000 Enhancers Primary T helper naive cells fromperipheralblood blood
35 chr15:52261800-52263000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
36 chr15:52261800-52263000 Enhancers Primary T regulatory cells fromperipheralblood blood
37 chr15:52261800-52263200 Enhancers Primary monocytes fromperipheralblood blood
38 chr15:52261800-52263200 Enhancers Pancreas Pancrea
39 chr15:52261800-52263200 Enhancers Sigmoid Colon Sigmoid Colon
40 chr15:52261800-52263400 Enhancers Small Intestine intestine
41 chr15:52262000-52262600 Enhancers Primary T cells from cord blood blood
42 chr15:52262000-52262600 Enhancers Rectal Mucosa Donor 29 rectum
43 chr15:52262000-52262600 Flanking Active TSS A549 lung
44 chr15:52262000-52262800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr15:52262000-52262800 Enhancers Fetal Thymus thymus
46 chr15:52262000-52263000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
47 chr15:52262000-52263000 Enhancers Brain Inferior Temporal Lobe brain
48 chr15:52262000-52263200 Flanking Active TSS Dnd41 blood
49 chr15:52262000-52263200 Active TSS HepG2 liver
50 chr15:52262000-52263400 Flanking Active TSS Hela-S3 cervix

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