Variant report

Variant	rs7162925
Chromosome Location	chr15:52158658-52158659
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52157498..52159871-chr15:52162459..52164030,2	K562	blood:
2	chr15:52158309..52160218-chr15:52163470..52165265,2	MCF-7	breast:
3	chr15:52121292..52123074-chr15:52158568..52161271,2	MCF-7	breast:
4	chr15:52120688..52125353-chr15:52156993..52161402,10	MCF-7	breast:
5	chr15:52152690..52156184-chr15:52157432..52160441,3	K562	blood:
6	chr15:52151375..52154020-chr15:52156501..52159080,2	MCF-7	breast:
7	chr15:52154684..52157161-chr15:52157942..52160441,2	K562	blood:
8	chr15:52158294..52160875-chr15:52263682..52265379,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000138594	Chromatin interaction
ENSG00000259632	Chromatin interaction
ENSG00000166477	Chromatin interaction

Extended variants
information (count: 242 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:240)

rs_ID	r²[population]
rs1001690	0.92[CEU][hapmap]
rs1025184	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1035737	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1035739	0.88[EUR][1000 genomes]
rs10444824	0.85[EUR][1000 genomes]
rs10444825	0.84[EUR][1000 genomes]
rs10851503	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10851504	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11049	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11070865	1.00[CEU][hapmap]
rs11070868	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[EUR][1000 genomes]
rs11070869	0.84[EUR][1000 genomes]
rs1133883	1.00[CEU][hapmap]
rs1135871	0.82[EUR][1000 genomes]
rs11630253	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11630579	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[EUR][1000 genomes]
rs11630943	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[EUR][1000 genomes]
rs11631858	0.85[EUR][1000 genomes]
rs11636869	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11637876	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11638677	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12050524	0.85[EUR][1000 genomes]
rs12591672	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12592771	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs12593708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12901638	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12902346	0.83[EUR][1000 genomes]
rs12902930	0.88[ASN][1000 genomes]
rs12903781	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs12904413	0.84[EUR][1000 genomes]
rs12904900	0.84[EUR][1000 genomes]
rs12905283	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12908327	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12912928	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12913583	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12913850	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12915015	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12915568	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17526463	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[EUR][1000 genomes]
rs17526760	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17539905	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17610862	0.84[EUR][1000 genomes]
rs17611193	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[EUR][1000 genomes]
rs17612102	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17612123	0.90[EUR][1000 genomes]
rs17705817	0.82[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1840708	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs1863430	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1991267	0.88[CEU][hapmap]
rs2006773	0.94[EUR][1000 genomes]
rs2007335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2007355	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2009972	0.88[CEU][hapmap]
rs2010026	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2011995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2034856	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[EUR][1000 genomes]
rs2052705	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2052706	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2052708	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2052709	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2114191	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2241503	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2251135	0.84[EUR][1000 genomes]
rs2252606	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2252831	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2253116	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2258248	0.88[CEU][hapmap]
rs2303443	0.89[CHB][hapmap];0.88[AMR][1000 genomes]
rs2414122	0.83[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2433217	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2433221	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2433222	0.96[EUR][1000 genomes]
rs2436655	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2436656	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2436657	0.96[EUR][1000 genomes]
rs2436658	0.94[EUR][1000 genomes]
rs2436660	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2436662	0.94[EUR][1000 genomes]
rs2441780	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2448946	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2448947	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2448948	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2448949	0.92[EUR][1000 genomes]
rs2448950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2448951	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2448953	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470590	0.83[EUR][1000 genomes]
rs2470591	0.85[EUR][1000 genomes]
rs2470599	0.93[ASN][1000 genomes]
rs2470600	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2470601	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2470602	0.94[EUR][1000 genomes]
rs2470603	0.88[EUR][1000 genomes]
rs2470604	0.83[EUR][1000 genomes]
rs2470605	0.86[EUR][1000 genomes]
rs2470607	0.87[EUR][1000 genomes]
rs2470608	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2470610	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470611	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470612	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470615	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2470616	0.93[EUR][1000 genomes]
rs2470617	0.96[CEU][hapmap]
rs2470618	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2554314	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[EUR][1000 genomes]
rs2554322	0.94[EUR][1000 genomes]
rs2554327	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2554328	0.94[EUR][1000 genomes]
rs2554337	0.84[EUR][1000 genomes]
rs2554342	0.95[EUR][1000 genomes]
rs2554348	0.92[CEU][hapmap]
rs2554349	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2554350	0.96[EUR][1000 genomes]
rs2554353	0.94[EUR][1000 genomes]
rs2570238	0.94[EUR][1000 genomes]
rs2570239	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2570240	0.91[EUR][1000 genomes]
rs2570241	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2570248	0.94[EUR][1000 genomes]
rs2570263	0.95[EUR][1000 genomes]
rs2570268	0.95[EUR][1000 genomes]
rs2570269	0.94[EUR][1000 genomes]
rs2570271	0.94[EUR][1000 genomes]
rs2570275	0.94[EUR][1000 genomes]
rs2593168	0.96[EUR][1000 genomes]
rs2593170	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2593173	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2593177	0.95[EUR][1000 genomes]
rs2593179	0.95[EUR][1000 genomes]
rs2593181	0.88[CEU][hapmap]
rs2593182	0.96[EUR][1000 genomes]
rs2593183	0.96[EUR][1000 genomes]
rs2593185	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs2593187	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2593188	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2593194	0.84[EUR][1000 genomes]
rs2593198	0.94[EUR][1000 genomes]
rs2593199	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2593202	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2593204	0.88[EUR][1000 genomes]
rs2623243	0.94[EUR][1000 genomes]
rs2623244	0.94[EUR][1000 genomes]
rs2623255	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2623266	0.96[EUR][1000 genomes]
rs2623271	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2623279	0.96[EUR][1000 genomes]
rs2623281	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2623282	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2623283	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2623284	0.96[EUR][1000 genomes]
rs2623285	0.96[EUR][1000 genomes]
rs2623286	0.96[EUR][1000 genomes]
rs2623288	0.95[EUR][1000 genomes]
rs2623289	0.94[EUR][1000 genomes]
rs2912186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2912187	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2912188	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2912189	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2912190	0.80[EUR][1000 genomes]
rs2916169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2916170	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2916171	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2916172	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2916175	0.86[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2916176	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2916177	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2921951	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2921953	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2921957	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2929422	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2929423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2929424	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2929425	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2929426	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2929428	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2959285	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2959289	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2959291	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2959292	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2959293	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2959295	0.85[ASN][1000 genomes]
rs2959296	0.87[CEU][hapmap]
rs2959298	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2959299	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2959300	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2959302	0.93[EUR][1000 genomes]
rs2959304	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2959305	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2959306	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2959307	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3110551	0.85[EUR][1000 genomes]
rs3110553	0.83[EUR][1000 genomes]
rs34504520	0.85[EUR][1000 genomes]
rs34842090	0.84[EUR][1000 genomes]
rs35270232	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35823585	0.86[EUR][1000 genomes]
rs36087956	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3794532	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[EUR][1000 genomes]
rs4365237	0.80[EUR][1000 genomes]
rs56148956	0.85[EUR][1000 genomes]
rs56185947	0.86[EUR][1000 genomes]
rs62015190	0.89[EUR][1000 genomes]
rs62016192	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6493520	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[EUR][1000 genomes]
rs6493521	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs6493525	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6493526	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67895020	0.88[AMR][1000 genomes]
rs7162554	0.94[EUR][1000 genomes]
rs7163541	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7164961	0.85[EUR][1000 genomes]
rs7168659	1.00[CEU][hapmap]
rs7170091	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7170910	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7171516	0.86[EUR][1000 genomes]
rs7171796	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7174497	1.00[CEU][hapmap];0.83[CHB][hapmap];0.80[EUR][1000 genomes]
rs7174808	1.00[CEU][hapmap];0.83[CHB][hapmap];0.80[EUR][1000 genomes]
rs7178166	0.80[EUR][1000 genomes]
rs7178561	1.00[CEU][hapmap];0.80[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7178776	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7178940	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7179599	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs7181540	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs726158	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[EUR][1000 genomes]
rs72732914	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8024585	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8025069	0.80[EUR][1000 genomes]
rs8026521	0.87[EUR][1000 genomes]
rs8028486	0.94[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8028922	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs8029036	0.90[EUR][1000 genomes]
rs8033433	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8035126	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8035173	0.92[CEU][hapmap]
rs8038344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8040975	0.80[EUR][1000 genomes]
rs8040991	0.94[EUR][1000 genomes]
rs990665	0.96[EUR][1000 genomes]
rs9944235	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830255	chr15:52133914-52274863	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7162925	SCG3	cis	Frontal Cortex	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52141600-52166800	Weak transcription	Stomach Mucosa	stomach
2	chr15:52141800-52176200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:52145800-52176600	Weak transcription	Psoas Muscle	Psoas
4	chr15:52148200-52176200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:52149000-52161000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:52149400-52171000	Weak transcription	Brain Angular Gyrus	brain
7	chr15:52149800-52160600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:52149800-52168000	Weak transcription	Right Ventricle	heart
9	chr15:52150600-52160800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:52152400-52170000	Weak transcription	Pancreas	Pancrea
11	chr15:52152400-52170800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:52153200-52161200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:52153200-52161600	Genic enhancers	NHEK	skin
14	chr15:52153400-52161600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:52153800-52178000	Weak transcription	Brain Germinal Matrix	brain
16	chr15:52154000-52161600	Genic enhancers	HMEC	breast
17	chr15:52154400-52159400	Weak transcription	Fetal Heart	heart
18	chr15:52154400-52162000	Weak transcription	Small Intestine	intestine
19	chr15:52154400-52165800	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:52154400-52170200	Weak transcription	Fetal Brain Male	brain
21	chr15:52155000-52158800	Strong transcription	Fetal Intestine Large	intestine
22	chr15:52155000-52160000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr15:52155000-52160400	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr15:52155000-52160800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr15:52155000-52162600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr15:52155000-52162800	Strong transcription	Fetal Stomach	stomach
27	chr15:52155000-52164000	Strong transcription	Primary B cells from cord blood	blood
28	chr15:52155000-52165400	Strong transcription	Dnd41	blood
29	chr15:52155000-52167600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:52155000-52167800	Strong transcription	Primary B cells from peripheral blood	blood
31	chr15:52155000-52169800	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr15:52155000-52170800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr15:52155000-52173600	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr15:52155200-52160400	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr15:52155200-52167800	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr15:52155200-52169600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr15:52155200-52170600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr15:52155400-52159200	Strong transcription	Primary hematopoietic stem cells	blood
39	chr15:52155400-52163800	Strong transcription	Primary T cells from cord blood	blood
40	chr15:52155400-52165400	Strong transcription	Thymus	Thymus
41	chr15:52155600-52164800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr15:52155600-52166400	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr15:52155600-52192000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr15:52156000-52159200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr15:52156000-52211000	Weak transcription	Brain Substantia Nigra	brain
46	chr15:52156200-52159200	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr15:52156200-52161400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr15:52156400-52170600	Weak transcription	Brain Anterior Caudate	brain
49	chr15:52156600-52159600	Strong transcription	Fetal Brain Female	brain
50	chr15:52156800-52162200	Weak transcription	Aorta	Aorta

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