Variant report

Variant rs12593708
Chromosome Location chr15:52155395-52155396
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52139200-52156200 Weak transcription Fetal Intestine Small intestine
2 chr15:52139400-52156600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr15:52140200-52155400 Weak transcription HSMMtube muscle
4 chr15:52140600-52155400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
5 chr15:52141400-52155400 Weak transcription Skeletal Muscle Male skeletal muscle
6 chr15:52141600-52166800 Weak transcription Stomach Mucosa stomach
7 chr15:52141800-52176200 Weak transcription Brain Cingulate Gyrus brain
8 chr15:52142200-52155400 Weak transcription Colon Smooth Muscle Colon
9 chr15:52145000-52156600 Weak transcription Fetal Brain Female brain
10 chr15:52145800-52176600 Weak transcription Psoas Muscle Psoas
11 chr15:52148200-52157000 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr15:52148200-52176200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr15:52149000-52161000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr15:52149200-52155400 Weak transcription Ovary ovary
15 chr15:52149200-52156200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
16 chr15:52149400-52156400 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr15:52149400-52171000 Weak transcription Brain Angular Gyrus brain
18 chr15:52149600-52155600 Weak transcription HUES64 Cell Line embryonic stem cell
19 chr15:52149600-52156800 Weak transcription H1 Cell Line embryonic stem cell
20 chr15:52149800-52156400 Weak transcription iPS-15b Cell Line embryonic stem cell
21 chr15:52149800-52156400 Weak transcription iPS-18 Cell Line embryonic stem cell
22 chr15:52149800-52156400 Weak transcription iPS-20b Cell Line embryonic stem cell
23 chr15:52149800-52160600 Weak transcription Placenta Amnion Placenta Amnion
24 chr15:52149800-52168000 Weak transcription Right Ventricle heart
25 chr15:52150600-52160800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr15:52151600-52155400 Weak transcription Thymus Thymus
27 chr15:52151800-52156400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr15:52152200-52156600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
29 chr15:52152400-52170000 Weak transcription Pancreas Pancrea
30 chr15:52152400-52170800 Weak transcription Rectal Smooth Muscle rectum
31 chr15:52153200-52156800 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr15:52153200-52158400 Genic enhancers A549 lung
33 chr15:52153200-52161200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr15:52153200-52161600 Genic enhancers NHEK skin
35 chr15:52153400-52155800 Weak transcription Colonic Mucosa Colon
36 chr15:52153400-52156600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
37 chr15:52153400-52157000 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr15:52153400-52158400 Strong transcription Hela-S3 cervix
39 chr15:52153400-52161600 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr15:52153600-52155400 Weak transcription Fetal Kidney kidney
41 chr15:52153800-52158000 Strong transcription GM12878-XiMat blood
42 chr15:52153800-52178000 Weak transcription Brain Germinal Matrix brain
43 chr15:52154000-52156200 Weak transcription Gastric stomach
44 chr15:52154000-52161600 Genic enhancers HMEC breast
45 chr15:52154200-52155400 Genic enhancers Primary T helper naive cells from peripheral blood blood
46 chr15:52154200-52156200 Weak transcription Esophagus oesophagus
47 chr15:52154400-52155400 Enhancers Primary T helper 17 cells PMA-I stimulated --
48 chr15:52154400-52155400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
49 chr15:52154400-52155600 Enhancers Primary T killer naive cells fromperipheralblood blood
50 chr15:52154400-52159400 Weak transcription Fetal Heart heart

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