Variant report

Variant	rs17612102
Chromosome Location	chr15:52264094-52264095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:420)
CpG islands
(count:122)
Chromatin interactive
region (count:21)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:420 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr15:52263446-52264432	SK-N-SH_RA	brain:	n/a	chr15:52264170-52264179 chr15:52264167-52264176 chr15:52264168-52264179
2	POLR2A	chr15:52263521-52264344	GM19193	blood:	n/a	n/a
3	NFIC	chr15:52263751-52264280	HepG2	liver:	n/a	n/a
4	MAX	chr15:52263281-52264275	ECC-1	luminal epithelium:	n/a	n/a
5	POLR2A	chr15:52263495-52264267	A549	lung:	n/a	n/a
6	HA-E2F1	chr15:52263328-52264656	MCF-7	breast:	n/a	chr15:52264167-52264176
7	MYC	chr15:52263425-52264319	NB4	blood:	n/a	n/a
8	POLR2A	chr15:52263657-52264319	GM12878	blood:	n/a	n/a
9	POLR2A	chr15:52263600-52264670	HUVEC	blood vessel:	n/a	n/a
10	TAF1	chr15:52263674-52264153	PFSK-1	brain:	n/a	n/a
11	POLR2A	chr15:52263314-52264354	GM12891	blood:	n/a	n/a
12	TAF1	chr15:52263412-52264290	K562	blood:	n/a	n/a
13	POLR2A	chr15:52263520-52264246	A549	lung:	n/a	n/a
14	TAF1	chr15:52263468-52264223	HepG2	liver:	n/a	n/a
15	STAT3	chr15:52263842-52264133	GM12878	blood:	n/a	n/a
16	POLR2A	chr15:52263608-52264724	PANC-1	pancreas:	n/a	n/a
17	POLR2A	chr15:52263578-52264323	GM12892	blood:	n/a	n/a
18	TAF1	chr15:52263417-52264425	MCF-7	breast:	n/a	n/a
19	POLR2A	chr15:52263527-52264324	GM12892	blood:	n/a	n/a
20	GATA1	chr15:52263708-52264145	K562	blood:	n/a	n/a
21	POLR2A	chr15:52263631-52264351	K562	blood:	n/a	n/a
22	PML	chr15:52263792-52264201	GM12878	blood:	n/a	n/a
23	RFX5	chr15:52263836-52264149	GM12878	blood:	n/a	n/a
24	TAF1	chr15:52263615-52264212	GM12891	blood:	n/a	n/a
25	GATA3	chr15:52263709-52264184	T-47D	breast:	n/a	n/a
26	CHD1	chr15:52263542-52264301	GM12878	blood:	n/a	n/a
27	ATF2	chr15:52263714-52264280	GM12878	blood:	n/a	n/a
28	MYC	chr15:52263879-52264120	MCF-7	breast:	n/a	n/a
29	GABPA	chr15:52263229-52264494	MCF-7	breast:	n/a	chr15:52263630-52263639 chr15:52264167-52264176 chr15:52263597-52263611
30	MAX	chr15:52263299-52264247	Hela-S3	cervix:	n/a	n/a
31	ZNF143	chr15:52263466-52264181	H1-hESC	embryonic stem cell:	n/a	n/a
32	POLR2A	chr15:52263324-52264465	GM12892	blood:	n/a	n/a
33	POLR2A	chr15:52263338-52264518	H1-hESC	embryonic stem cell:	n/a	n/a
34	HEY1	chr15:52263563-52264350	HepG2	liver:	n/a	chr15:52263801-52263816
35	ATF3	chr15:52263449-52264284	A549	lung:	n/a	chr15:52263630-52263639 chr15:52264167-52264176
36	POLR2A	chr15:52263611-52264308	HepG2	liver:	n/a	n/a
37	POLR2A	chr15:52263357-52264416	HL-60	blood:	n/a	n/a
38	POLR2A	chr15:52263401-52264502	K562	blood:	n/a	n/a
39	HEY1	chr15:52263494-52264283	K562	blood:	n/a	chr15:52263801-52263816
40	E2F4	chr15:52263913-52264137	MCF10A-Er-Src	breast:	n/a	n/a
41	CEBPB	chr15:52263627-52264319	GM12878	blood:	n/a	n/a
42	MAFK	chr15:52263737-52264112	K562	blood:	n/a	n/a
43	POLR2A	chr15:52263437-52264280	H1-hESC	embryonic stem cell:	n/a	n/a
44	SIN3AK20	chr15:52263763-52264257	PFSK-1	brain:	n/a	n/a
45	TCF12	chr15:52263903-52264182	H1-hESC	embryonic stem cell:	n/a	n/a
46	MTA3	chr15:52263327-52264247	GM12878	blood:	n/a	n/a
47	YY1	chr15:52263518-52264220	HCT-116	colon:	n/a	chr15:52264170-52264179 chr15:52264167-52264176 chr15:52264168-52264179
48	SMC3	chr15:52263889-52264146	HepG2	liver:	n/a	n/a
49	POLR2A	chr15:52263557-52264306	K562	blood:	n/a	n/a
50	CTCF	chr15:52263640-52264095	Spleen_OC	spleen:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:52264074-52264124	Caco-2	colon:	n/a
2	chr15:52264074-52264124	NT2-D1	testis:	n/a
3	chr15:52264074-52264124	HMEC	breast:	n/a
4	chr15:52264060-52264110	SAEC	small airway:	n/a
5	chr15:52264074-52264124	HIPEpiC	eye:	n/a
6	chr15:52264074-52264124	BE2_C	brain:	n/a
7	chr15:52264060-52264110	HMEC	breast:	n/a
8	chr15:52264074-52264124	NH-A	brain:	n/a
9	chr15:52264060-52264110	Hepatocyte	liver:	n/a
10	chr15:52264074-52264124	ECC-1	luminal epithelium:	n/a
11	chr15:52264060-52264110	HepG2	liver:	n/a
12	chr15:52264060-52264110	U87	brain:	n/a
13	chr15:52264074-52264124	NHBE	bronchial:	n/a
14	chr15:52264074-52264124	K562	blood:	n/a
15	chr15:52264060-52264110	NH-A	brain:	n/a
16	chr15:52264060-52264110	Hela-S3	cervix:	n/a
17	chr15:52264074-52264124	GM12892	blood:	n/a
18	chr15:52264060-52264110	RPTEC	kidney:	n/a
19	chr15:52264074-52264124	A549	lung:	n/a
20	chr15:52264060-52264110	AG04450	lung:	fetal
21	chr15:52264060-52264110	HL-60	blood:	n/a
22	chr15:52264060-52264110	GM12892	blood:	n/a
23	chr15:52264060-52264110	HAEpiC	amniotic membrane:	n/a
24	chr15:52264060-52264110	PFSK-1	brain:	n/a
25	chr15:52264060-52264110	HEK293	kidney:	embryo
26	chr15:52264074-52264124	SK-N-SH	brain:	n/a
27	chr15:52264074-52264124	H1-hESC	embryonic stem cell:	embryo
28	chr15:52264060-52264110	HCF	heart:	n/a
29	chr15:52264074-52264124	HCM	heart:	n/a
30	chr15:52264060-52264110	ovcar-3	ovarian:	n/a
31	chr15:52264074-52264124	SK-N-SH_RA	brain:	n/a
32	chr15:52264074-52264124	MCF10A-Er-Src	breast:	n/a
33	chr15:52264060-52264110	SKMC	muscle:	n/a
34	chr15:52264074-52264124	PrEC	prostate:	n/a
35	chr15:52264060-52264110	H1-hESC	embryonic stem cell:	embryo
36	chr15:52264074-52264124	U87	brain:	n/a
37	chr15:52264074-52264124	SK-N-MC	brain:	n/a
38	chr15:52264074-52264124	HEK293	kidney:	embryo
39	chr15:52264074-52264124	Jurkat	blood:	n/a
40	chr15:52264074-52264124	HEEpiC	esophagus:	n/a
41	chr15:52264060-52264110	ECC-1	luminal epithelium:	n/a
42	chr15:52264074-52264124	RPTEC	kidney:	n/a
43	chr15:52264060-52264110	Jurkat	blood:	n/a
44	chr15:52264060-52264110	SK-N-MC	brain:	n/a
45	chr15:52264060-52264110	AG09319	gingival:	n/a
46	chr15:52264060-52264110	PrEC	prostate:	n/a
47	chr15:52264074-52264124	HNPCEpiC	eye:	n/a
48	chr15:52264074-52264124	GM12891	blood:	n/a
49	chr15:52264074-52264124	HAEpiC	amniotic membrane:	n/a
50	chr15:52264074-52264124	BJ	skin:	n/a

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52261233..52265470-chr15:52469433..52474401,7	MCF-7	breast:
2	chr15:52243665..52246508-chr15:52262168..52265352,3	MCF-7	breast:
3	chr15:52262145..52266701-chr15:52309209..52314377,19	MCF-7	breast:
4	chr15:52263277..52265007-chr15:52427883..52430038,2	MCF-7	breast:
5	chr15:52262628..52265811-chr15:52469801..52473537,4	MCF-7	breast:
6	chr15:52262398..52265193-chr15:52386264..52389426,3	MCF-7	breast:
7	chr15:52263208..52265625-chr15:52404085..52407650,4	MCF-7	breast:
8	chr15:52262270..52265607-chr15:52309730..52314612,10	K562	blood:
9	chr15:52244109..52249001-chr15:52262072..52265545,5	MCF-7	breast:
10	chr15:52263578..52264205-chr16:30905028..30905583,2	Hela-S3	cervix:
11	chr15:52262830..52265268-chr15:52372078..52374982,4	MCF-7	breast:
12	chr15:52073675..52076293-chr15:52262420..52265302,2	MCF-7	breast:
13	chr15:52264035..52264681-chr19:46498316..46499226,2	NB4	blood:
14	chr15:52259207..52267788-chr15:52308373..52314434,24	MCF-7	breast:
15	chr15:52165419..52167687-chr15:52262244..52264140,2	MCF-7	breast:
16	chr15:52262650..52264778-chr15:52432288..52435005,3	MCF-7	breast:
17	chr15:52263518..52264139-chr18:33552244..33552887,2	MCF-7	breast:
18	chr1:86173626..86174408-chr15:52263575..52264268,2	NB4	blood:
19	chr15:52262263..52265564-chr15:52309489..52315686,9	K562	blood:
20	chr15:52263605..52264209-chr5:10353462..10354012,2	HCT-116	colon:
21	chr15:52262407..52265136-chr15:52430706..52432521,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAPK6-12	chr15:52263674-52264103	NONHSAT043898

No data

Variant related genes	Relation type
LEO1	TF binding region
LEO1	CpG island
ENSG00000259438	Chromatin interaction
ENSG00000141428	Chromatin interaction
ENSG00000069966	Chromatin interaction
ENSG00000259802	Chromatin interaction
ENSG00000128872	Chromatin interaction
ENSG00000145495	Chromatin interaction
ENSG00000137875	Chromatin interaction
ENSG00000166477	Chromatin interaction
ENSG00000259577	Chromatin interaction
ENSG00000242327	Chromatin interaction
ENSG00000099385	Chromatin interaction
ENSG00000211591	Chromatin interaction
ENSG00000117174	Chromatin interaction
ENSG00000069956	Chromatin interaction
ENSG00000138594	Chromatin interaction
ENSG00000104983	Chromatin interaction
ENSG00000259178	Chromatin interaction

Extended variants
information (count: 219 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:214)

rs_ID	r²[population]
rs1025184	0.95[EUR][1000 genomes]
rs1035737	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1035739	0.88[EUR][1000 genomes]
rs10444824	0.82[EUR][1000 genomes]
rs10444825	0.81[EUR][1000 genomes]
rs10851503	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10851504	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11049	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11070868	0.82[EUR][1000 genomes]
rs11070869	0.82[EUR][1000 genomes]
rs1135871	0.81[EUR][1000 genomes]
rs11630253	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11630579	0.82[EUR][1000 genomes]
rs11630943	0.82[EUR][1000 genomes]
rs11631858	0.80[EUR][1000 genomes]
rs11636869	0.83[EUR][1000 genomes]
rs11637876	0.84[EUR][1000 genomes]
rs11638677	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12050524	0.81[EUR][1000 genomes]
rs12591672	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12593708	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12901638	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12902346	0.87[EUR][1000 genomes]
rs12902930	0.80[ASN][1000 genomes]
rs12904413	0.82[EUR][1000 genomes]
rs12904900	0.81[EUR][1000 genomes]
rs12905283	0.83[EUR][1000 genomes]
rs12908327	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12912928	0.83[EUR][1000 genomes]
rs12913583	0.84[EUR][1000 genomes]
rs12913850	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12915015	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12915568	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17526463	0.83[EUR][1000 genomes]
rs17526760	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17539905	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17610862	0.82[EUR][1000 genomes]
rs17611193	0.83[EUR][1000 genomes]
rs17612123	0.94[EUR][1000 genomes]
rs1863430	0.84[EUR][1000 genomes]
rs2006773	0.87[EUR][1000 genomes]
rs2007335	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2007355	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2011995	0.88[EUR][1000 genomes]
rs2034856	0.82[EUR][1000 genomes]
rs2052705	0.91[EUR][1000 genomes]
rs2052706	0.92[EUR][1000 genomes]
rs2052708	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2052709	0.92[EUR][1000 genomes]
rs2114191	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2241503	0.88[EUR][1000 genomes]
rs2251135	0.87[EUR][1000 genomes]
rs2252606	0.92[EUR][1000 genomes]
rs2252831	0.87[EUR][1000 genomes]
rs2253116	0.93[EUR][1000 genomes]
rs2414122	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2433217	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2433221	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2433222	0.92[EUR][1000 genomes]
rs2436655	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2436656	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2436657	0.92[EUR][1000 genomes]
rs2436658	0.94[EUR][1000 genomes]
rs2436660	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2436662	0.87[EUR][1000 genomes]
rs2441780	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2448946	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2448947	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2448948	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2448949	0.90[EUR][1000 genomes]
rs2448950	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2448951	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2448953	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470590	0.87[EUR][1000 genomes]
rs2470591	0.87[EUR][1000 genomes]
rs2470599	0.85[ASN][1000 genomes]
rs2470600	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2470601	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2470602	0.94[EUR][1000 genomes]
rs2470603	0.88[EUR][1000 genomes]
rs2470604	0.83[EUR][1000 genomes]
rs2470605	0.87[EUR][1000 genomes]
rs2470607	0.88[EUR][1000 genomes]
rs2470608	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2470610	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2470611	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470612	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470615	0.95[ASN][1000 genomes]
rs2470616	0.95[EUR][1000 genomes]
rs2470618	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2554314	0.83[EUR][1000 genomes]
rs2554322	0.90[EUR][1000 genomes]
rs2554327	0.87[EUR][1000 genomes]
rs2554328	0.87[EUR][1000 genomes]
rs2554337	0.87[EUR][1000 genomes]
rs2554342	0.93[EUR][1000 genomes]
rs2554349	0.92[EUR][1000 genomes]
rs2554350	0.92[EUR][1000 genomes]
rs2554353	0.87[EUR][1000 genomes]
rs2570238	0.87[EUR][1000 genomes]
rs2570239	0.87[EUR][1000 genomes]
rs2570240	0.84[EUR][1000 genomes]
rs2570241	0.84[EUR][1000 genomes]
rs2570248	0.87[EUR][1000 genomes]
rs2570263	0.91[EUR][1000 genomes]
rs2570268	0.93[EUR][1000 genomes]
rs2570269	0.94[EUR][1000 genomes]
rs2570271	0.94[EUR][1000 genomes]
rs2570275	0.94[EUR][1000 genomes]
rs2593168	0.92[EUR][1000 genomes]
rs2593170	0.91[EUR][1000 genomes]
rs2593173	0.92[EUR][1000 genomes]
rs2593177	0.90[EUR][1000 genomes]
rs2593179	0.93[EUR][1000 genomes]
rs2593182	0.92[EUR][1000 genomes]
rs2593183	0.92[EUR][1000 genomes]
rs2593185	0.94[EUR][1000 genomes]
rs2593187	0.94[EUR][1000 genomes]
rs2593188	0.94[EUR][1000 genomes]
rs2593194	0.87[EUR][1000 genomes]
rs2593198	0.94[EUR][1000 genomes]
rs2593199	0.94[EUR][1000 genomes]
rs2593202	0.94[EUR][1000 genomes]
rs2593204	0.88[EUR][1000 genomes]
rs2623243	0.94[EUR][1000 genomes]
rs2623244	0.94[EUR][1000 genomes]
rs2623255	0.93[EUR][1000 genomes]
rs2623266	0.92[EUR][1000 genomes]
rs2623271	0.87[EUR][1000 genomes]
rs2623279	0.92[EUR][1000 genomes]
rs2623281	0.91[EUR][1000 genomes]
rs2623282	0.92[EUR][1000 genomes]
rs2623283	0.92[EUR][1000 genomes]
rs2623284	0.92[EUR][1000 genomes]
rs2623285	0.92[EUR][1000 genomes]
rs2623286	0.92[EUR][1000 genomes]
rs2623288	0.93[EUR][1000 genomes]
rs2623289	0.93[EUR][1000 genomes]
rs2912186	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2912187	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2912188	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2912189	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2912190	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2916169	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2916170	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2916171	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2916172	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2916175	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2916176	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2916177	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2921951	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2921953	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2921957	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2929422	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2929423	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2929424	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2929425	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2929426	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2929428	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2959285	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2959289	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2959291	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2959292	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2959293	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2959295	0.91[ASN][1000 genomes]
rs2959298	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2959299	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2959300	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2959302	0.95[EUR][1000 genomes]
rs2959304	0.85[EUR][1000 genomes]
rs2959305	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2959306	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2959307	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3110551	0.88[EUR][1000 genomes]
rs3110553	0.87[EUR][1000 genomes]
rs34504520	0.81[EUR][1000 genomes]
rs34842090	0.87[EUR][1000 genomes]
rs35270232	0.84[EUR][1000 genomes]
rs35823585	0.84[EUR][1000 genomes]
rs36087956	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3794532	0.82[EUR][1000 genomes]
rs56148956	0.81[EUR][1000 genomes]
rs56185947	0.81[EUR][1000 genomes]
rs62015190	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62016192	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6493520	0.84[EUR][1000 genomes]
rs6493521	0.81[EUR][1000 genomes]
rs6493525	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6493526	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7162554	0.94[EUR][1000 genomes]
rs7162925	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7163541	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7164961	0.82[EUR][1000 genomes]
rs7170091	0.82[EUR][1000 genomes]
rs7170910	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7171516	0.82[EUR][1000 genomes]
rs7171796	0.84[EUR][1000 genomes]
rs7178561	0.83[EUR][1000 genomes]
rs7178776	0.84[EUR][1000 genomes]
rs7178940	0.83[EUR][1000 genomes]
rs7179599	0.82[EUR][1000 genomes]
rs726158	0.82[EUR][1000 genomes]
rs72732914	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8024585	0.83[EUR][1000 genomes]
rs8026521	0.83[EUR][1000 genomes]
rs8028486	0.84[EUR][1000 genomes]
rs8028922	0.81[EUR][1000 genomes]
rs8029036	0.93[EUR][1000 genomes]
rs8033433	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8035126	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8038344	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8040991	0.87[EUR][1000 genomes]
rs990665	0.92[EUR][1000 genomes]
rs9944235	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830255	chr15:52133914-52274863	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1053788	chr15:52223389-52307138	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1047260	chr15:52257100-52337418	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
5	nsv569410	chr15:52257874-52273132	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52262200-52264600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr15:52262200-52264800	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr15:52262200-52265000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:52262400-52264600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:52262400-52264600	Active TSS	Colonic Mucosa	Colon
6	chr15:52262400-52264800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:52262400-52265000	Active TSS	HSMM	muscle
8	chr15:52262600-52264600	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr15:52262600-52264600	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr15:52262600-52264600	Active TSS	GM12878-XiMat	blood
11	chr15:52262600-52264800	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr15:52262600-52264800	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr15:52262600-52264800	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr15:52262600-52264800	Active TSS	HMEC	breast
15	chr15:52262600-52264800	Active TSS	K562	blood
16	chr15:52262800-52264600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr15:52262800-52264600	Active TSS	H9 Cell Line	embryonic stem cell
18	chr15:52262800-52264600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:52262800-52264800	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr15:52262800-52264800	Active TSS	H1 Cell Line	embryonic stem cell
21	chr15:52262800-52264800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:52262800-52264800	Active TSS	HSMMtube	muscle
23	chr15:52263000-52264400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr15:52263000-52264600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:52263000-52264600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr15:52263000-52264600	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr15:52263000-52264600	Active TSS	Psoas Muscle	Psoas
28	chr15:52263000-52264600	Active TSS	Right Ventricle	heart
29	chr15:52263000-52264600	Active TSS	NHDF-Ad	bronchial
30	chr15:52263000-52264800	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr15:52263000-52264800	Active TSS	Fetal Kidney	kidney
32	chr15:52263000-52264800	Active TSS	Fetal Muscle Trunk	muscle
33	chr15:52263000-52264800	Active TSS	A549	lung
34	chr15:52263200-52264400	Active TSS	Fetal Brain Male	brain
35	chr15:52263200-52264400	Active TSS	Gastric	stomach
36	chr15:52263200-52264400	Active TSS	Lung	lung
37	chr15:52263200-52264600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr15:52263200-52264600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:52263200-52264600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr15:52263200-52264600	Active TSS	Muscle Satellite Cultured Cells	--
41	chr15:52263200-52264600	Active TSS	Brain Cingulate Gyrus	brain
42	chr15:52263200-52264600	Active TSS	Esophagus	oesophagus
43	chr15:52263200-52264600	Active TSS	Fetal Stomach	stomach
44	chr15:52263200-52264600	Active TSS	Left Ventricle	heart
45	chr15:52263200-52264600	Active TSS	Ovary	ovary
46	chr15:52263200-52264600	Active TSS	Stomach Mucosa	stomach
47	chr15:52263200-52264600	Active TSS	Dnd41	blood
48	chr15:52263200-52264800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:52263200-52264800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:52263200-52264800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Variant report

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