Variant report

Variant	rs12908327
Chromosome Location	chr15:52153204-52153205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52120607..52125174-chr15:52151783..52155506,6	MCF-7	breast:
2	chr15:52120409..52123453-chr15:52147332..52153488,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138594	Chromatin interaction

Extended variants
information (count: 277 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:275)

rs_ID	r²[population]
rs1001690	0.92[CEU][hapmap]
rs1025184	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs1035737	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1035739	0.85[EUR][1000 genomes]
rs10444824	0.91[EUR][1000 genomes]
rs10444825	0.90[EUR][1000 genomes]
rs10775145	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs10851503	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10851504	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11070865	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap]
rs11070866	0.84[EUR][1000 genomes]
rs11070867	0.84[EUR][1000 genomes]
rs11070868	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs11070869	0.90[EUR][1000 genomes]
rs1133883	1.00[CEU][hapmap]
rs1135871	0.81[EUR][1000 genomes]
rs11630253	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11630579	1.00[CEU][hapmap];0.83[CHB][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11630943	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs11631858	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11636345	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs11636869	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11637876	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11638677	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11638820	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs12050524	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12591672	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12592771	0.94[CHB][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs12593708	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12901638	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12902346	0.81[EUR][1000 genomes]
rs12902930	0.97[ASN][1000 genomes]
rs12903500	0.82[EUR][1000 genomes]
rs12903707	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs12903781	0.94[CHB][hapmap];0.80[CHD][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs12904413	0.90[EUR][1000 genomes]
rs12904900	0.89[EUR][1000 genomes]
rs12905283	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs12912928	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12913583	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12913850	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12915015	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12915568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12917133	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs1350174	0.82[GIH][hapmap];0.83[TSI][hapmap]
rs17526463	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs17526760	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17539905	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17610862	0.90[EUR][1000 genomes]
rs17611193	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs17612102	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17612123	0.88[EUR][1000 genomes]
rs17705817	0.88[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1811326	0.89[GIH][hapmap];0.89[TSI][hapmap]
rs1840708	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs1863430	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1902430	0.82[GIH][hapmap];0.83[TSI][hapmap]
rs1972689	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs1991267	0.85[CEU][hapmap]
rs2006773	0.98[EUR][1000 genomes]
rs2007335	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2007355	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2009972	0.89[CEU][hapmap];0.89[TSI][hapmap]
rs2010026	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2011995	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2014638	0.89[GIH][hapmap];0.89[TSI][hapmap]
rs2034856	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2034857	0.90[GIH][hapmap];0.87[TSI][hapmap]
rs2034858	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs2052705	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2052706	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2052708	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2052709	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2077743	0.82[GIH][hapmap];0.83[TSI][hapmap]
rs2114191	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2241503	0.96[CEU][hapmap];0.93[GIH][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs2251135	0.81[EUR][1000 genomes]
rs2252606	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2252831	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes]
rs2253116	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs2258248	0.85[CEU][hapmap]
rs2303443	0.91[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes]
rs2414116	0.81[GIH][hapmap]
rs2414122	0.91[ASW][hapmap];0.84[CEU][hapmap];0.88[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2433217	0.92[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2433221	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2433222	0.93[EUR][1000 genomes]
rs2436655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2436656	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2436657	0.93[EUR][1000 genomes]
rs2436658	0.91[EUR][1000 genomes]
rs2436660	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2436662	0.98[EUR][1000 genomes]
rs2441780	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2448946	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.98[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2448947	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2448948	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2448949	0.89[EUR][1000 genomes]
rs2448950	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2448951	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2448953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470590	0.81[EUR][1000 genomes]
rs2470591	0.81[EUR][1000 genomes]
rs2470599	0.92[ASN][1000 genomes]
rs2470600	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2470601	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470602	0.91[EUR][1000 genomes]
rs2470603	0.85[EUR][1000 genomes]
rs2470604	0.80[EUR][1000 genomes]
rs2470605	0.84[EUR][1000 genomes]
rs2470607	0.84[EUR][1000 genomes]
rs2470608	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2470610	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470611	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470615	0.83[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs2470616	0.90[EUR][1000 genomes]
rs2470617	0.96[CEU][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap]
rs2470618	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2554314	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2554322	0.91[EUR][1000 genomes]
rs2554327	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes]
rs2554328	0.98[EUR][1000 genomes]
rs2554336	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs2554337	0.81[EUR][1000 genomes]
rs2554342	0.92[EUR][1000 genomes]
rs2554348	0.92[CEU][hapmap]
rs2554349	1.00[CEU][hapmap];0.97[GIH][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs2554350	0.93[EUR][1000 genomes]
rs2554353	0.98[EUR][1000 genomes]
rs2570224	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs2570228	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs2570238	0.97[EUR][1000 genomes]
rs2570239	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.97[EUR][1000 genomes]
rs2570240	0.95[EUR][1000 genomes]
rs2570241	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs2570248	0.98[EUR][1000 genomes]
rs2570258	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs2570263	0.92[EUR][1000 genomes]
rs2570268	0.92[EUR][1000 genomes]
rs2570269	0.91[EUR][1000 genomes]
rs2570271	0.91[EUR][1000 genomes]
rs2570275	0.91[EUR][1000 genomes]
rs2593168	0.93[EUR][1000 genomes]
rs2593170	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs2593173	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs2593177	0.91[EUR][1000 genomes]
rs2593179	0.94[EUR][1000 genomes]
rs2593181	0.85[CEU][hapmap]
rs2593182	0.93[EUR][1000 genomes]
rs2593183	0.93[EUR][1000 genomes]
rs2593185	0.83[CEU][hapmap];0.91[EUR][1000 genomes]
rs2593187	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2593188	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs2593194	0.81[EUR][1000 genomes]
rs2593198	0.91[EUR][1000 genomes]
rs2593199	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2593202	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2593204	0.85[EUR][1000 genomes]
rs2623243	0.91[EUR][1000 genomes]
rs2623244	0.91[EUR][1000 genomes]
rs2623255	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs2623266	0.93[EUR][1000 genomes]
rs2623271	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes]
rs2623279	0.93[EUR][1000 genomes]
rs2623281	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2623282	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2623283	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2623284	0.93[EUR][1000 genomes]
rs2623285	0.93[EUR][1000 genomes]
rs2623286	0.93[EUR][1000 genomes]
rs2623288	0.92[EUR][1000 genomes]
rs2623289	0.91[EUR][1000 genomes]
rs2912186	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2912187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2912188	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2912189	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2912190	0.81[EUR][1000 genomes]
rs2916169	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2916170	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2916171	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2916172	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2916175	0.93[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2916176	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2916177	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2921951	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2921953	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2921957	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2929422	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2929423	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2929424	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2929425	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2929426	1.00[CEU][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2929428	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2959285	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2959289	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2959291	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2959292	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2959293	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2959295	0.83[ASN][1000 genomes]
rs2959296	0.84[CEU][hapmap]
rs2959298	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2959299	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2959300	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2959302	0.90[EUR][1000 genomes]
rs2959304	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2959305	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2959306	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2959307	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3110551	0.82[EUR][1000 genomes]
rs3110553	0.81[EUR][1000 genomes]
rs34504520	0.90[EUR][1000 genomes]
rs34842090	0.81[EUR][1000 genomes]
rs35270232	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35823585	0.92[EUR][1000 genomes]
rs36087956	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3751596	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs3794532	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs3794535	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs4238383	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs4365237	0.86[EUR][1000 genomes]
rs4774602	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs4775983	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs56148956	0.90[EUR][1000 genomes]
rs56185947	0.91[EUR][1000 genomes]
rs62015190	0.90[EUR][1000 genomes]
rs62016192	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6493520	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs6493521	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6493523	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs6493525	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6493526	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67895020	0.90[AMR][1000 genomes]
rs689884	0.86[GIH][hapmap];0.85[TSI][hapmap]
rs7162176	0.84[EUR][1000 genomes]
rs7162554	0.91[EUR][1000 genomes]
rs7162925	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7163541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7164961	0.91[EUR][1000 genomes]
rs7165585	0.83[TSI][hapmap]
rs7168659	1.00[CEU][hapmap]
rs7170091	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7170910	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7171516	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7171796	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7174497	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs7174808	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs7175017	0.85[EUR][1000 genomes]
rs7178166	0.86[EUR][1000 genomes]
rs7178561	1.00[CEU][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7178776	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7178940	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7179599	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7181540	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7181553	0.86[GIH][hapmap];0.83[TSI][hapmap]
rs726158	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs72732914	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8024585	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8025069	0.86[EUR][1000 genomes]
rs8026521	0.92[EUR][1000 genomes]
rs8027721	0.84[EUR][1000 genomes]
rs8028258	0.84[GIH][hapmap];0.83[TSI][hapmap]
rs8028486	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8028922	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs8029036	0.88[EUR][1000 genomes]
rs8033433	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8035126	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8035173	0.92[CEU][hapmap];0.93[GIH][hapmap]
rs8038344	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8040975	0.86[EUR][1000 genomes]
rs8040991	0.98[EUR][1000 genomes]
rs8041866	0.81[EUR][1000 genomes]
rs990665	0.93[EUR][1000 genomes]
rs9944235	1.00[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830255	chr15:52133914-52274863	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12908327	SCG3	cis	Frontal Cortex	GTEx
rs12908327	TMOD2	cis	cerebellum	SCAN

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52130000-52155000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr15:52130800-52155200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:52135800-52155000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr15:52136000-52155200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:52136200-52155000	Weak transcription	Aorta	Aorta
6	chr15:52136600-52153400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr15:52137800-52155000	Weak transcription	Fetal Intestine Large	intestine
8	chr15:52138000-52153400	Weak transcription	Esophagus	oesophagus
9	chr15:52138000-52155000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:52138600-52155000	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:52139000-52153400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:52139200-52156200	Weak transcription	Fetal Intestine Small	intestine
13	chr15:52139400-52156600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:52139600-52154800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:52139800-52153400	Weak transcription	Fetal Thymus	thymus
16	chr15:52139800-52153600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:52140000-52155000	Weak transcription	NH-A	brain
18	chr15:52140200-52155400	Weak transcription	HSMMtube	muscle
19	chr15:52140400-52155000	Weak transcription	HSMM	muscle
20	chr15:52140600-52155400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:52141400-52155400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:52141600-52155000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr15:52141600-52166800	Weak transcription	Stomach Mucosa	stomach
24	chr15:52141800-52154000	Weak transcription	Adipose Nuclei	Adipose
25	chr15:52141800-52155000	Weak transcription	Fetal Stomach	stomach
26	chr15:52141800-52176200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr15:52142200-52155400	Weak transcription	Colon Smooth Muscle	Colon
28	chr15:52143200-52153400	Weak transcription	Spleen	Spleen
29	chr15:52143400-52153400	Weak transcription	Right Atrium	heart
30	chr15:52144200-52153400	Weak transcription	Lung	lung
31	chr15:52144200-52155000	Weak transcription	K562	blood
32	chr15:52145000-52156600	Weak transcription	Fetal Brain Female	brain
33	chr15:52145400-52153800	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr15:52145600-52153400	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr15:52145600-52155000	Weak transcription	Placenta	Placenta
36	chr15:52145800-52154000	Weak transcription	Left Ventricle	heart
37	chr15:52145800-52176600	Weak transcription	Psoas Muscle	Psoas
38	chr15:52146400-52153600	Weak transcription	Small Intestine	intestine
39	chr15:52146600-52155200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr15:52147400-52155000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr15:52147600-52153800	Weak transcription	Gastric	stomach
42	chr15:52148000-52155000	Weak transcription	Osteobl	bone
43	chr15:52148200-52153400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr15:52148200-52153400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr15:52148200-52155000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:52148200-52157000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr15:52148200-52176200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr15:52148400-52155200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr15:52148600-52155000	Weak transcription	Brain Hippocampus Middle	brain
50	chr15:52148600-52155000	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links