Variant report

Variant	rs4775983
Chromosome Location	chr15:52091785-52091786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52087845..52094257-chr15:52120068..52124048,9	MCF-7	breast:
2	chr15:52087804..52093803-chr15:52117139..52123482,14	MCF-7	breast:
3	chr15:52089712..52091955-chr15:52094446..52096730,3	MCF-7	breast:
4	chr15:52091331..52093041-chr15:52113410..52115469,2	MCF-7	breast:
5	chr15:52088548..52091371-chr15:52091695..52094863,3	K562	blood:
6	chr15:52089220..52092399-chr15:52092458..52095936,3	K562	blood:
7	chr15:52089329..52092071-chr15:52108088..52110534,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138594	Chromatin interaction

Extended variants
information (count: 219 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:217)

rs_ID	r²[population]
rs1001690	0.86[CHB][hapmap]
rs1025184	0.95[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs1035737	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs1035739	0.86[ASN][1000 genomes]
rs10444798	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10444823	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10775145	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11070864	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11070865	0.86[GIH][hapmap];0.84[TSI][hapmap]
rs11070868	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs1133882	0.96[CEU][hapmap];0.81[CHB][hapmap]
rs11630084	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11630579	0.85[YRI][hapmap]
rs11630943	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs11632106	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11636345	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11637876	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs11638161	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11638766	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11638820	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12438686	0.91[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs12903707	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12905283	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12908327	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs12917133	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1350174	0.96[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1466276	0.92[CEU][hapmap];0.82[CHB][hapmap];0.81[AMR][1000 genomes]
rs1545602	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17526463	0.83[ASW][hapmap];0.91[GIH][hapmap];0.89[TSI][hapmap];0.91[YRI][hapmap]
rs17526760	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs17611193	0.83[ASW][hapmap];0.91[GIH][hapmap];0.89[TSI][hapmap];0.91[YRI][hapmap]
rs17705732	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs1811326	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1840708	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs1867984	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1895863	0.93[ASN][1000 genomes]
rs1902430	0.96[CEU][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1972689	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2006772	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2006773	0.81[CHB][hapmap]
rs2007355	0.93[GIH][hapmap];0.89[TSI][hapmap]
rs2009972	0.91[CHB][hapmap];0.93[CHD][hapmap];0.82[TSI][hapmap];0.82[ASN][1000 genomes]
rs2014638	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2034856	0.93[GIH][hapmap];0.89[TSI][hapmap]
rs2034857	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2034858	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2052705	0.81[CHB][hapmap]
rs2052709	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs2077743	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2114191	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs2241503	1.00[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.86[ASN][1000 genomes]
rs2252606	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs2252831	0.81[CHB][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs2253116	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.88[ASN][1000 genomes]
rs2264339	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2303443	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs2414116	0.89[GIH][hapmap]
rs2414117	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2414119	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2414122	0.83[GIH][hapmap]
rs2433217	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2433221	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs2436658	0.86[ASN][1000 genomes]
rs2436660	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs2436661	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2441780	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs2448946	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs2470602	0.86[ASN][1000 genomes]
rs2470603	0.86[ASN][1000 genomes]
rs2470604	0.83[ASN][1000 genomes]
rs2470605	0.85[ASN][1000 genomes]
rs2470607	0.85[ASN][1000 genomes]
rs2470612	0.87[TSI][hapmap]
rs2470616	0.81[ASN][1000 genomes]
rs2470617	0.85[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];0.84[TSI][hapmap]
rs2470619	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2554305	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2554306	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2554307	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2554308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2554314	0.91[YRI][hapmap]
rs2554315	0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs2554327	0.82[CHB][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs2554328	0.80[AMR][1000 genomes]
rs2554332	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2554334	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2554336	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2554342	0.88[ASN][1000 genomes]
rs2554345	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2554349	0.95[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2554350	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2554353	0.80[AMR][1000 genomes]
rs2554354	0.84[CEU][hapmap]
rs2554355	0.82[CEU][hapmap]
rs2570224	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2570228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2570231	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2570233	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2570235	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2570236	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2570237	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2570238	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2570239	0.82[CHB][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes]
rs2570240	0.80[AMR][1000 genomes]
rs2570241	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes]
rs2570243	0.85[CEU][hapmap]
rs2570251	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2570252	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2570253	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2570258	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2570260	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2570263	0.86[ASN][1000 genomes]
rs2570268	0.88[ASN][1000 genomes]
rs2570269	0.86[ASN][1000 genomes]
rs2570271	0.86[ASN][1000 genomes]
rs2570275	0.88[ASN][1000 genomes]
rs2593167	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2593169	0.85[CEU][hapmap]
rs2593170	0.82[CHB][hapmap];0.91[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs2593173	1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2593179	0.87[ASN][1000 genomes]
rs2593183	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2593185	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs2593187	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2593188	0.82[CHB][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs2593191	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2593198	0.88[ASN][1000 genomes]
rs2593202	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs2593204	0.86[ASN][1000 genomes]
rs2623245	0.82[CEU][hapmap]
rs2623247	0.85[CEU][hapmap]
rs2623251	0.85[CEU][hapmap]
rs2623254	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2623255	0.82[CHB][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs2623259	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2623262	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2623263	0.85[CEU][hapmap]
rs2623270	0.82[CEU][hapmap]
rs2623271	0.82[CHB][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs2623279	0.88[ASN][1000 genomes]
rs2623281	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs2623282	0.82[CHB][hapmap]
rs2623283	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs2623286	0.87[ASN][1000 genomes]
rs2623288	0.88[ASN][1000 genomes]
rs2623289	0.87[ASN][1000 genomes]
rs2912189	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs2916172	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs2916176	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs2916177	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs2929425	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs2929426	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs2959285	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs2959293	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs2959298	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs2959299	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs2959302	0.83[ASN][1000 genomes]
rs3751596	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3794530	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3794534	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3794535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3794536	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4238383	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4502160	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4534783	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4622456	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4774602	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4775978	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4775982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55843525	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55887408	0.94[EUR][1000 genomes]
rs58758283	0.97[ASN][1000 genomes]
rs60329909	0.98[ASN][1000 genomes]
rs6493518	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6493519	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6493520	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs6493522	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6493523	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6493525	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs6493526	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs67895020	0.91[EUR][1000 genomes]
rs689884	0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs689922	0.90[ASN][1000 genomes]
rs690287	0.91[ASN][1000 genomes]
rs690638	0.91[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs7162554	0.85[ASN][1000 genomes]
rs7163176	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7165283	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs7165585	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7166110	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7166962	0.81[AMR][1000 genomes]
rs7168659	0.86[CHB][hapmap];0.81[AMR][1000 genomes]
rs7170091	0.82[CHB][hapmap];0.83[YRI][hapmap]
rs7171459	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7173375	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7174497	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs7174808	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs7174941	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7176421	0.94[ASN][1000 genomes]
rs7178561	0.82[CHB][hapmap]
rs7181553	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7182917	0.94[EUR][1000 genomes]
rs72732952	0.92[ASN][1000 genomes]
rs8024081	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8024088	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8024589	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8026521	0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8027244	0.81[AMR][1000 genomes]
rs8027721	0.89[AMR][1000 genomes]
rs8028258	1.00[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8028890	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8028922	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs8035173	0.83[GIH][hapmap]
rs8041268	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs919059	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9635308	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs990665	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv3361968	chr15:52087428-52107237	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs4775983	TMOD2	cis	cerebellum	SCAN
rs4775983	SCG3	cis	Frontal Cortex	GTEx
rs4775983	LYSMD2	cis	Muscle Skeletal	GTEx
rs4775983	TMOD2	cis	parietal	SCAN
rs4775983	SCG3	cis	Cerebellum	GTEx
rs4775983	SCG3	cis	cerebellum	SCAN
rs4775983	SCG3	cis	Brain Pons	GTEx
rs4775983	SCG3	cis	Temporal Cortex	GTEx

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52052200-52101800	Weak transcription	Colonic Mucosa	Colon
2	chr15:52052600-52106600	Weak transcription	HSMM	muscle
3	chr15:52060200-52103400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:52060800-52101200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:52060800-52102600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:52060800-52105400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr15:52061600-52112000	Weak transcription	NHLF	lung
8	chr15:52061800-52098600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:52074000-52100000	Weak transcription	NHDF-Ad	bronchial
10	chr15:52074800-52102800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:52076400-52098400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:52076800-52104400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr15:52077200-52098600	Weak transcription	Fetal Brain Male	brain
14	chr15:52079000-52098400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:52079200-52098600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr15:52080000-52099000	Weak transcription	Colon Smooth Muscle	Colon
17	chr15:52080800-52102600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:52085400-52095600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:52085800-52105200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:52085800-52108800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr15:52086200-52093000	Weak transcription	Liver	Liver
22	chr15:52086400-52098400	Weak transcription	Brain Substantia Nigra	brain
23	chr15:52086600-52093200	Weak transcription	Fetal Lung	lung
24	chr15:52086800-52093000	Weak transcription	Placenta	Placenta
25	chr15:52088600-52093400	Strong transcription	Thymus	Thymus
26	chr15:52088800-52092000	Strong transcription	Primary T cells from cord blood	blood
27	chr15:52089000-52091800	Strong transcription	Aorta	Aorta
28	chr15:52089000-52095000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:52089000-52106400	Weak transcription	HSMMtube	muscle
30	chr15:52089200-52093600	Weak transcription	Small Intestine	intestine
31	chr15:52089200-52107200	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr15:52089400-52099200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:52089600-52092000	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr15:52089600-52101200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr15:52089800-52092000	Enhancers	A549	lung
36	chr15:52089800-52098400	Weak transcription	Fetal Intestine Large	intestine
37	chr15:52089800-52101000	Weak transcription	Fetal Intestine Small	intestine
38	chr15:52090400-52092000	Strong transcription	Fetal Muscle Leg	muscle
39	chr15:52090400-52092000	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr15:52090400-52092200	Strong transcription	Primary B cells from cord blood	blood
41	chr15:52090400-52092200	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:52090400-52092200	Strong transcription	Stomach Smooth Muscle	stomach
43	chr15:52090400-52092400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr15:52090400-52092400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:52090400-52092800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:52090400-52093200	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr15:52090400-52095000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:52090400-52104400	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr15:52090600-52091800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr15:52090600-52091800	Strong transcription	Sigmoid Colon	Sigmoid Colon

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