The 2.0 version of rSNPBase

Variant report

Variant rs4534783
Chromosome Location chr15:52080565-52080566
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52052200-52101800 Weak transcription Colonic Mucosa Colon
2 chr15:52052600-52106600 Weak transcription HSMM muscle
3 chr15:52053400-52090600 Weak transcription Pancreas Pancrea
4 chr15:52060200-52103400 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr15:52060400-52085400 Weak transcription Fetal Lung lung
6 chr15:52060600-52087400 Weak transcription Gastric stomach
7 chr15:52060600-52088400 Weak transcription Duodenum Mucosa Duodenum
8 chr15:52060600-52091000 Weak transcription Right Ventricle heart
9 chr15:52060800-52101200 Weak transcription Primary T helper naive cells from peripheral blood blood
10 chr15:52060800-52102600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
11 chr15:52060800-52105400 Weak transcription Primary T killer memory cells from peripheral blood blood
12 chr15:52061600-52085400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr15:52061600-52112000 Weak transcription NHLF lung
14 chr15:52061800-52098600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr15:52064400-52090400 Weak transcription Left Ventricle heart
16 chr15:52065600-52090600 Weak transcription Spleen Spleen
17 chr15:52065800-52091000 Weak transcription Esophagus oesophagus
18 chr15:52067200-52090600 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr15:52067600-52090600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
20 chr15:52067800-52089000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr15:52069200-52091000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr15:52069400-52085200 Weak transcription Pancreatic Islets Pancreatic Islet
23 chr15:52072800-52080600 Strong transcription Primary B cells from peripheral blood blood
24 chr15:52073400-52085400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr15:52074000-52090600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
26 chr15:52074000-52100000 Weak transcription NHDF-Ad bronchial
27 chr15:52074800-52102800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
28 chr15:52075000-52080600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr15:52075000-52088600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr15:52075000-52090600 Weak transcription Dnd41 blood
31 chr15:52075600-52089000 Weak transcription Aorta Aorta
32 chr15:52076000-52080800 Strong transcription Primary T cells from cord blood blood
33 chr15:52076400-52098400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
34 chr15:52076600-52090400 Weak transcription Primary B cells from cord blood blood
35 chr15:52076600-52090400 Weak transcription Primary T helper naive cells fromperipheralblood blood
36 chr15:52076600-52090400 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr15:52076600-52090400 Weak transcription Stomach Smooth Muscle stomach
38 chr15:52076600-52090600 Weak transcription Primary T cells fromperipheralblood blood
39 chr15:52076600-52090600 Weak transcription Fetal Muscle Trunk muscle
40 chr15:52076800-52085400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
41 chr15:52076800-52085600 Weak transcription Brain Substantia Nigra brain
42 chr15:52076800-52090800 Weak transcription Primary neutrophils fromperipheralblood blood
43 chr15:52076800-52090800 Weak transcription Primary T helper cells PMA-I stimulated --
44 chr15:52076800-52104400 Weak transcription Primary T killer naive cells fromperipheralblood blood
45 chr15:52077000-52090400 Weak transcription Skeletal Muscle Female skeletal muscle
46 chr15:52077200-52098600 Weak transcription Fetal Brain Male brain
47 chr15:52079000-52098400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr15:52079200-52080600 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
49 chr15:52079200-52089600 Weak transcription Primary T helper cells fromperipheralblood blood
50 chr15:52079200-52090600 Weak transcription Fetal Thymus thymus

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Last update: Aug 31, 2015