Variant report

Variant	rs4238383
Chromosome Location	chr15:52048710-52048711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr15:52048594-52048716	K562	blood:	n/a	n/a
2	CEBPB	chr15:52048597-52049045	K562	blood:	n/a	n/a
3	CTCF	chr15:52048620-52048770	HPF	lung:	n/a	n/a
4	SPI1	chr15:52048662-52049133	HL-60	blood:	n/a	chr15:52048918-52048931
5	GATA3	chr15:52048618-52048951	T-47D	breast:	n/a	n/a
6	CTCF	chr15:52048580-52048730	NB4	blood:	n/a	n/a
7	SPI1	chr15:52048610-52049152	HL-60	blood:	n/a	chr15:52048918-52048931

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52047517..52051526-chr15:52055116..52057120,3	K562	blood:
2	chr15:52043733..52046292-chr15:52047210..52050045,3	MCF-7	breast:
3	chr15:52027911..52030761-chr15:52046678..52049036,2	K562	blood:
4	chr15:52043149..52046754-chr15:52046824..52050469,4	K562	blood:
5	chr15:52046348..52048954-chr15:52084849..52087226,2	K562	blood:
6	chr15:51997400..52000250-chr15:52046573..52049240,2	MCF-7	breast:
7	chr15:52028579..52031295-chr15:52046217..52050933,5	MCF-7	breast:
8	chr15:52042908..52046919-chr15:52047131..52052382,6	MCF-7	breast:

No data

Variant related genes	Relation type
LYSMD2	TF binding region
ENSG00000259377	Chromatin interaction
ENSG00000140280	Chromatin interaction
ENSG00000128872	Chromatin interaction

Extended variants
information (count: 178 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:176)

rs_ID	r²[population]
rs1001690	0.81[CHB][hapmap]
rs1035737	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs10444798	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10444823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10775145	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11070864	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11070865	0.86[GIH][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes]
rs11070868	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs1133882	0.96[CEU][hapmap]
rs11630084	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11630943	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs11632106	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11636345	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11637876	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs11638161	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11638766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638820	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438686	0.86[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs12903707	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12905283	0.89[ASW][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs12908327	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs12917133	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1350174	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1466276	0.92[CEU][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1545602	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17526463	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs17526760	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs17611193	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs17705732	0.90[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1811326	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1840708	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs1867984	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1895863	0.83[ASN][1000 genomes]
rs1902430	0.94[ASW][hapmap];0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1972689	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2006772	0.87[EUR][1000 genomes]
rs2007355	0.93[GIH][hapmap];0.87[TSI][hapmap]
rs2009972	0.86[CHB][hapmap];0.91[CHD][hapmap]
rs2014638	1.00[CEU][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs2034856	0.89[ASW][hapmap];0.93[GIH][hapmap];0.88[LWK][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs2034857	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2034858	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.96[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2052709	0.90[CHB][hapmap]
rs2077743	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2114191	0.86[GIH][hapmap];0.87[TSI][hapmap]
rs2252606	0.95[CHB][hapmap]
rs2252831	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs2253116	0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap]
rs2264339	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2303443	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs2414116	0.83[ASW][hapmap];0.89[GIH][hapmap];0.98[LWK][hapmap];0.91[MKK][hapmap];0.86[AFR][1000 genomes]
rs2414117	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2414119	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2414122	0.83[GIH][hapmap]
rs2433217	0.88[GIH][hapmap];0.85[TSI][hapmap]
rs2433221	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2436660	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2436661	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2441780	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs2448946	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2470612	0.85[TSI][hapmap]
rs2470619	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2554305	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2554306	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2554307	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2554308	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2554315	0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2554327	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs2554332	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2554334	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2554336	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2554345	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2554349	0.90[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap]
rs2554354	0.84[CEU][hapmap]
rs2554355	0.82[CEU][hapmap]
rs2570224	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs2570228	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2570231	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2570233	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2570235	0.88[EUR][1000 genomes]
rs2570236	0.87[EUR][1000 genomes]
rs2570237	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2570238	0.81[ASN][1000 genomes]
rs2570239	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs2570241	0.93[GIH][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap]
rs2570243	0.85[CEU][hapmap]
rs2570251	0.87[EUR][1000 genomes]
rs2570252	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2570253	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2570258	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2570260	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2593169	0.85[CEU][hapmap]
rs2593170	0.91[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs2593173	0.95[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap]
rs2593191	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2593202	0.95[CHB][hapmap]
rs2623245	0.82[CEU][hapmap]
rs2623247	0.85[CEU][hapmap]
rs2623251	0.85[CEU][hapmap]
rs2623254	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2623255	0.88[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs2623259	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2623262	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2623263	0.85[CEU][hapmap]
rs2623270	0.82[CEU][hapmap]
rs2623271	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs2623281	0.95[CHB][hapmap]
rs2623283	0.95[CHB][hapmap]
rs2912189	0.91[GIH][hapmap];0.85[TSI][hapmap]
rs2916172	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs2916176	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs2916177	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2929425	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs2929426	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2959285	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs2959293	0.86[GIH][hapmap];0.87[TSI][hapmap]
rs2959298	0.86[GIH][hapmap];0.87[TSI][hapmap]
rs2959299	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs3088312	0.86[AMR][1000 genomes]
rs3751596	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3794530	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3794534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3794535	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.83[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3794536	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4502160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4534783	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4622456	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4774602	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4775978	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4775982	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4775983	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55843525	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55887408	0.90[EUR][1000 genomes]
rs58758283	0.87[ASN][1000 genomes]
rs60329909	0.88[ASN][1000 genomes]
rs6493515	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6493518	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493519	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6493520	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs6493522	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6493523	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6493525	0.91[GIH][hapmap];0.87[TSI][hapmap]
rs6493526	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs67895020	0.84[EUR][1000 genomes]
rs689884	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs689922	0.96[ASN][1000 genomes]
rs690287	0.94[ASN][1000 genomes]
rs690638	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7163176	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7165283	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7165585	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[GIH][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7166110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7166962	0.89[AMR][1000 genomes]
rs7168659	0.81[CHB][hapmap];0.89[AMR][1000 genomes]
rs7171459	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7173375	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7174497	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs7174808	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs7174941	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7176421	0.84[ASN][1000 genomes]
rs7179599	0.84[YRI][hapmap]
rs7181553	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.99[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7182917	0.87[EUR][1000 genomes]
rs72732952	0.83[ASN][1000 genomes]
rs8024081	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8024088	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8024589	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8026521	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs8027721	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8028258	0.94[ASW][hapmap];1.00[CEU][hapmap];0.88[GIH][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8028890	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8028922	0.91[GIH][hapmap];0.87[TSI][hapmap];0.86[YRI][hapmap]
rs8035173	0.83[GIH][hapmap]
rs8041268	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs919059	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9635308	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830011	chr15:52027777-52048710	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a
2	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs4238383	SCG3	cis	cerebellum	SCAN
rs4238383	SCG3	cis	Frontal Cortex	GTEx
rs4238383	SCG3	cis	Brain Pons	GTEx
rs4238383	SCG3	cis	Temporal Cortex	GTEx
rs4238383	GNB5	cis	lymphoblastoid	seeQTL
rs4238383	LYSMD2	cis	Muscle Skeletal	GTEx
rs4238383	SCG3	cis	Cerebellum	GTEx
rs4238383	TMOD2	cis	parietal	SCAN

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52044400-52050800	Weak transcription	Gastric	stomach
2	chr15:52044600-52060000	Weak transcription	Esophagus	oesophagus
3	chr15:52044600-52060200	Weak transcription	Aorta	Aorta
4	chr15:52044800-52049800	Weak transcription	Psoas Muscle	Psoas
5	chr15:52044800-52050600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:52044800-52051000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:52044800-52051000	Weak transcription	Right Ventricle	heart
8	chr15:52044800-52060000	Weak transcription	Spleen	Spleen
9	chr15:52045000-52049800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:52045000-52049800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:52045000-52050600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr15:52045000-52050800	Weak transcription	HMEC	breast
13	chr15:52045000-52060200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:52045200-52049800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:52045200-52050600	Weak transcription	Brain Germinal Matrix	brain
16	chr15:52045200-52053400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr15:52045400-52050400	Weak transcription	Fetal Brain Female	brain
18	chr15:52045400-52050600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr15:52045400-52050600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr15:52045400-52051000	Weak transcription	Left Ventricle	heart
21	chr15:52045600-52049800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:52045600-52050600	Weak transcription	Colon Smooth Muscle	Colon
23	chr15:52045800-52049800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr15:52045800-52053200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:52046000-52050400	Weak transcription	Fetal Brain Male	brain
26	chr15:52046400-52049200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:52046800-52060000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr15:52047000-52049400	Enhancers	Primary B cells from cord blood	blood
29	chr15:52047000-52052400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr15:52047200-52048800	Enhancers	Fetal Thymus	thymus
31	chr15:52047200-52053600	Enhancers	Brain Cingulate Gyrus	brain
32	chr15:52047400-52049200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr15:52047400-52049200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr15:52047400-52050800	Enhancers	Brain Anterior Caudate	brain
35	chr15:52047400-52050800	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr15:52047400-52050800	Enhancers	Brain Substantia Nigra	brain
37	chr15:52047400-52053600	Enhancers	Brain Hippocampus Middle	brain
38	chr15:52047600-52048800	Enhancers	Right Atrium	heart
39	chr15:52047600-52049000	Enhancers	Brain Angular Gyrus	brain
40	chr15:52048000-52048800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
41	chr15:52048000-52049000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
42	chr15:52048000-52050800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr15:52048000-52050800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:52048000-52058000	Weak transcription	Primary T cells from cord blood	blood
45	chr15:52048200-52048800	Enhancers	Primary hematopoietic stem cells	blood
46	chr15:52048200-52048800	Enhancers	Adipose Nuclei	Adipose
47	chr15:52048200-52050600	Weak transcription	Fetal Intestine Small	intestine
48	chr15:52048200-52060000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr15:52048200-52060200	Weak transcription	Thymus	Thymus
50	chr15:52048400-52050800	Weak transcription	Lung	lung

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